Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060211.seq
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    50   1e-06
U97002-8|AAB52265.2|  166|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ...    27   9.7  

>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
           family protein 3 protein.
          Length = 1092

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 26/65 (40%), Positives = 34/65 (52%)
 Frame = +3

Query: 12  DQAQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLXNSIQNADIAEDVRQTAAVLI 191
           D  QF +L+  L S DNDIR QAE+ Y  I   TKV  L  +  +     D R T  V +
Sbjct: 2   DVNQFTELITKLQSADNDIRKQAEEVYEKIEGPTKVAALFEAYTHHTNNSDARSTVLVFL 61

Query: 192 RRLFS 206
           RR+ +
Sbjct: 62  RRVLA 66



 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 20/61 (32%), Positives = 34/61 (55%)
 Frame = +2

Query: 305 LRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNXKEAGIRMFTSVPGVFGN 484
           +++K+ D++SE+A N IDD G+  W   L+ M  C  ++D       + +    P +FGN
Sbjct: 100 IKKKIADLISEIASNLIDDSGDMTWGGVLELMDHCLKSEDLTGNYIALLILRGCPIIFGN 159

Query: 485 R 487
           R
Sbjct: 160 R 160


>U97002-8|AAB52265.2|  166|Caenorhabditis elegans Hypothetical
           protein K09H11.6 protein.
          Length = 166

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -1

Query: 562 FAKPLIHLAAKQILTCLLHIQVFSLTISKYTWYRRKHSNTSFFXVWILRTG 410
           + +P I  A   ++ C+L   +F L +     +    S+  FF V+++ TG
Sbjct: 86  YLQPFIICALLHLIICILLSAIFFLYVVTRATFYSVWSDLGFFFVFVILTG 136


>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
            protein Y54E2A.6 protein.
          Length = 1798

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 435  KKLVLECLRLYQVYLEIVRLKTWM 506
            K ++ +C+R+ Q   E+ RLK W+
Sbjct: 1550 KSVLDQCIRILQAMREMARLKNWL 1573


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,849,607
Number of Sequences: 27780
Number of extensions: 249511
Number of successful extensions: 625
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)