Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060211.seq
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.3  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   3.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   3.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   8.9  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -2

Query: 483 FPNTP-GTDVNILIPA--SXMFGSCALAQVNMNCRNSGHWLLPS 361
           FP TP G +V ++     + +  +  + Q    C+  G W LPS
Sbjct: 201 FPATPTGREVALIEQTIGTCVANAVVIEQPTFLCKGDGKWYLPS 244


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
          protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 6  EGDQAQFYQLLNTLLSTDNDIRSQA 80
          +G QAQ +   NT LS DN   S +
Sbjct: 16 QGTQAQHWSRGNTWLSLDNSNMSMS 40


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
          protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 6  EGDQAQFYQLLNTLLSTDNDIRSQA 80
          +G QAQ +   NT LS DN   S +
Sbjct: 16 QGTQAQHWSRGNTWLSLDNSNMSMS 40


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 363 MATTSGLSSYSSCLPVPVR 419
           +A    + S S C+P+PVR
Sbjct: 212 LAKLRNVHSSSFCIPLPVR 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,062
Number of Sequences: 438
Number of extensions: 2837
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)