Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060211.seq
         (583 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    50   1e-06
At4g27640.1 68417.m03973 importin beta-2 subunit family protein ...    41   5e-04
At2g47230.1 68415.m05898 agenet domain-containing protein contai...    37   0.011
At5g57020.1 68418.m07117 myristoyl-CoA:protein N-myristoyltransf...    29   2.3  
At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing ...    27   6.9  
At3g44180.1 68416.m04737 syntaxin-related family protein contain...    27   9.1  

>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
           protein contains Pfam profile: PF03130 PBS lyase
           HEAT-like repeat
          Length = 1116

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 6/139 (4%)
 Frame = +2

Query: 104 NRNKSSAPXEFNSKCRHCRRCASNG-GRADTKII*CRIL*-----VLPEIAI*AADMLRE 265
           N  K S P   + K  H  + + +  GRA   ++  ++L      + P +++     L+ 
Sbjct: 47  NLAKQSNPDTLSLKLAHLLQLSPHPEGRAMAAVLLRKLLTRDDAYLWPRLSLSTQSSLKS 106

Query: 266 QLXLTLXMDLSQXLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNXKEAG 445
            +   +  + ++ + +K+CD VSELA   + ++G   WPE L F+F C ++  P  +E+ 
Sbjct: 107 SMLYCIQHEEAKSISKKICDTVSELASGILPENG---WPELLPFVFQCVTSVTPKLQESA 163

Query: 446 IRMFTSVPGVFGNRQTENL 502
             +   +    G   T ++
Sbjct: 164 FLILAQLSQYVGETLTPHI 182


>At4g27640.1 68417.m03973 importin beta-2 subunit family protein low
           similarity to importin 4 GI:18700635 from [Homo sapiens]
          Length = 1048

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 19/76 (25%), Positives = 42/76 (55%)
 Frame = +2

Query: 257 LREQLXLTLXMDLSQXLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNXK 436
           +++ L  ++ ++ S  +RR   +VVS +A+  +      +WP+ L F+F C+ +   + +
Sbjct: 79  VKQSLIESITVENSPPVRRASANVVSVVAKYAVPA---GEWPDLLTFLFQCSQSAQEDHR 135

Query: 437 EAGIRMFTSVPGVFGN 484
           E  + +F+S+    GN
Sbjct: 136 EVALILFSSLTETIGN 151



 Score = 35.1 bits (77), Expect = 0.034
 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 33  LLNTLLSTDNDIRSQAEDAYNNIPTETKVV-HLXNSIQNADIAEDVRQTAAVLIRR 197
           LL   L  DND R QAED    +  + +VV  L   ++ A    +VRQ AAVL+R+
Sbjct: 8   LLIQFLMPDNDARRQAEDQIKRLAKDPQVVPALVQHLRTAK-TPNVRQLAAVLLRK 62


>At2g47230.1 68415.m05898 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 701

 Score = 36.7 bits (81), Expect = 0.011
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +3

Query: 36  LNTLLSTDNDIRSQAEDAYNNIPTETKVVHLXNSIQNADIAEDVRQTAA 182
           +N   S  ND+  Q   A+ N+PTET + H    + NA IA DV +  A
Sbjct: 459 INDTSSICNDVDDQPLAAWINLPTETSIDHSPIVVNNAAIATDVEERQA 507


>At5g57020.1 68418.m07117 myristoyl-CoA:protein
           N-myristoyltransferase 1 (NMT1) identical to
           N-myristoyltransferase 1 (NMT1) [Arabidopsis thaliana]
           GI:7339834
          Length = 434

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 12  DQAQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLXN 134
           D   FY L +T+L   N    +A  +Y N+ T+T  + L N
Sbjct: 333 DFCSFYTLPSTILGNPNYTTLKAAYSYYNVATQTSFLQLMN 373


>At4g21030.1 68417.m03042 Dof-type zinc finger domain-containing
           protein prolamin box binding factor, Zea mays,
           PID:g2393775
          Length = 194

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 104 NRNKSSAPXEFNSKCRHCRRCASNGG 181
           N NK S P     KC++C RC ++GG
Sbjct: 37  NNNKKSQP---RYKCKNCCRCWTHGG 59


>At3g44180.1 68416.m04737 syntaxin-related family protein contains a
           novel domain similar to F-box that is shared among other
           proteins in Arabidopsis; similar to proteins At3g54160,
           At1g47920 (syntaxin SYP81), At5g41830, At3g58890,
           At1g56610, At1g48390,  At3g59270 [Arabidopsis thaliana]
          Length = 202

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 354 LMTMATTSGLSSYSSCLPVPVRKIQTXKKLVLECLRLYQVYL 479
           L+ +  +S    +   LP+ + +    K LVL CL + +VY+
Sbjct: 130 LVDLVFSSKKEGWKVLLPLLIERSPNLKNLVLSCLEVVKVYV 171


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,031,016
Number of Sequences: 28952
Number of extensions: 228131
Number of successful extensions: 481
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)