Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060210.seq
         (642 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VGP7 Cluster: CG5242-PA; n=5; Endopterygota|Rep: CG52...    79   1e-13
UniRef50_UPI00015B5B29 Cluster: PREDICTED: similar to ENSANGP000...    52   2e-05
UniRef50_UPI00003C02B2 Cluster: PREDICTED: similar to mitochondr...    48   1e-04
UniRef50_Q9NQ50 Cluster: 39S ribosomal protein L40, mitochondria...    43   0.007

>UniRef50_Q9VGP7 Cluster: CG5242-PA; n=5; Endopterygota|Rep:
           CG5242-PA - Drosophila melanogaster (Fruit fly)
          Length = 196

 Score = 78.6 bits (185), Expect = 1e-13
 Identities = 41/106 (38%), Positives = 56/106 (52%)
 Frame = +2

Query: 311 NARQLKPIDELEVPLHLMDSLKKYKRPPVQLSVEEIEARELLQXEWARYKRDEYVNDIXX 490
           NARQLKP+DELEVPL L+D   K +R    L+++++E R LL+ +WA YK DE V D   
Sbjct: 70  NARQLKPVDELEVPLELIDEKDKRQRKLAPLTIDQLEERALLKKQWAHYKHDERVADFQI 129

Query: 491 VDXIMAPRDALLTGCSMNQRICTMXLXMPGLXLLXXTXSGXVATPP 628
           +D ++  ++  L                    LL     G VATPP
Sbjct: 130 IDRLVQAQNKALAELRRESEELYQAAIDIDPQLLPVAVKGPVATPP 175


>UniRef50_UPI00015B5B29 Cluster: PREDICTED: similar to
           ENSANGP00000019899; n=1; Nasonia vitripennis|Rep:
           PREDICTED: similar to ENSANGP00000019899 - Nasonia
           vitripennis
          Length = 203

 Score = 51.6 bits (118), Expect = 2e-05
 Identities = 26/73 (35%), Positives = 40/73 (54%)
 Frame = +2

Query: 311 NARQLKPIDELEVPLHLMDSLKKYKRPPVQLSVEEIEARELLQXEWARYKRDEYVNDIXX 490
           +A+QLKPI E+EVP+ L   L   KR    L+ E +E R  L  EW +YK  ++   +  
Sbjct: 76  HAQQLKPIFEMEVPMSLKQELGIRKRDLPALTTETLEERAALFKEWNKYKTKQHYQTLRL 135

Query: 491 VDXIMAPRDALLT 529
           +D  M  +D  ++
Sbjct: 136 IDRYMFAQDKAIS 148



 Score = 41.5 bits (93), Expect = 0.017
 Identities = 23/67 (34%), Positives = 37/67 (55%)
 Frame = +3

Query: 84  FKMSILRQFSRLSICPTVKFQLNRNISTTSALTFKITEQLWAEPMXXXXXIDPAIVKHAK 263
           +   I+  FSRL++     F   RNIS+++ L   +T  L+AEP+     +DPAI++  +
Sbjct: 2   YSTGIINAFSRLAVNNV--FVPTRNISSSAPLGLNVTNVLFAEPLKKKKKMDPAIIRAKE 59

Query: 264 SAVVRKL 284
               RKL
Sbjct: 60  ERRKRKL 66


>UniRef50_UPI00003C02B2 Cluster: PREDICTED: similar to mitochondrial
           ribosomal protein L40 CG5242-PA; n=1; Apis
           mellifera|Rep: PREDICTED: similar to mitochondrial
           ribosomal protein L40 CG5242-PA - Apis mellifera
          Length = 202

 Score = 48.4 bits (110), Expect = 1e-04
 Identities = 32/105 (30%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
 Frame = +2

Query: 323 LKPIDELEVPLHLMDSLKKYKRPP--VQLSVEEIEARELLQXEWARYKRDEYVNDIXXV- 493
           +KPI E++    L ++L+  KRP     LS EEIE R LL+ EW +YK+++++ D+  + 
Sbjct: 81  MKPIFEIDT---LAETLQNDKRPCHLTSLSEEEIERRRLLEREWIKYKQNQWLKDLQVIK 137

Query: 494 DXIMAPRDALLTGCSMNQRICTMXLXMPGLXLLXXTXSGXVATPP 628
             + + + AL    ++++++    +    L  L    +G V TPP
Sbjct: 138 SMVTSQKTALKELKAVSKQLYKKAIEFDDL-YLPYDVTGPVHTPP 181



 Score = 36.3 bits (80), Expect = 0.63
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +3

Query: 114 RLSICPTVKFQLNRNIST-TSALTFKITEQLWAEPMXXXXXIDPAIVKHAKSAVVRKLRN 290
           R S+C     + +RNIS  T  L F+ TE L  EP+     +DPAI++  +    +KL+ 
Sbjct: 13  RSSLC---SIKNSRNISVYTYPLYFRATEILLGEPLKKKKKLDPAIIRAKEERKKKKLQK 69

Query: 291 KFGGLRRMLD 320
           +   L +  D
Sbjct: 70  RIRSLEKHKD 79


>UniRef50_Q9NQ50 Cluster: 39S ribosomal protein L40, mitochondrial
           precursor; n=18; Euteleostomi|Rep: 39S ribosomal protein
           L40, mitochondrial precursor - Homo sapiens (Human)
          Length = 206

 Score = 42.7 bits (96), Expect = 0.007
 Identities = 21/51 (41%), Positives = 32/51 (62%)
 Frame = +2

Query: 317 RQLKPIDELEVPLHLMDSLKKYKRPPVQLSVEEIEARELLQXEWARYKRDE 469
           ++L PI++   PL  +D  K  +RP V+L+ EE E R LL  +W+ YK+ E
Sbjct: 80  QELIPIEDFITPLKFLD--KARERPQVELTFEETERRALLLKKWSLYKQQE 128


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 476,142,842
Number of Sequences: 1657284
Number of extensions: 7469002
Number of successful extensions: 14696
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14695
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)