Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060210.seq
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    27   3.0  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    27   3.0  
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha...    27   3.0  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    26   4.0  
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    26   5.3  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   5.3  

>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 550 PLIHRTAXQERVSGCHDXVDXXNVVHIFITF 458
           P ++  + Q R+ GCHD     N+VH   T+
Sbjct: 349 PDVYELSDQVRIPGCHDMA--ANIVHFDTTY 377


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 362 SSEVEPPTHQLVSTV*HSSQASEFVSQFSYDG--ALRVFNNS 243
           S  V  P   ++ +   +S+A E+V + SY+G    R++N S
Sbjct: 30  SLSVSSPNESVIHSSHSASEADEYVCKLSYEGNRKKRIYNGS 71


>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 311 NARQLKPIDELEVPLHLMDSLKKYKRP-PVQ 400
           N   +   DEL+V   L + LK YK P P+Q
Sbjct: 162 NLLPILQFDELDVSAKLREGLKNYKEPTPIQ 192


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 320 QLKPIDELEVPLHLMDSLKKYKRPPVQLSVEEIE 421
           ++K ID+L +   ++DS KK K P  QL+  +IE
Sbjct: 160 EIKNIDDLGLKQRILDSYKKQK-PSGQLTSMQIE 192


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 500 SCRLVQCRSHIHHVCNE 450
           SC++ +C  HI  +CNE
Sbjct: 86  SCKVEECPVHIRTICNE 102


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 5   TRGFLISFSRILKFKESQSRNNH 73
           ++G L SFS I  F +S+S N+H
Sbjct: 526 SKGLLNSFSPISPFSKSKSHNHH 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,008,961
Number of Sequences: 5004
Number of extensions: 33170
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)