Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060210.seq
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53353| Best HMM Match : Vicilin_N (HMM E-Value=8.3)                 36   0.021
SB_58699| Best HMM Match : UCR_14kD (HMM E-Value=3.6e-37)              29   3.2  
SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_6584| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.01)           28   7.4  
SB_59206| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  

>SB_53353| Best HMM Match : Vicilin_N (HMM E-Value=8.3)
          Length = 171

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 24/85 (28%), Positives = 32/85 (37%)
 Frame = +2

Query: 383 KRPPVQLSVEEIEARELLQXEWARYKRDEYVNDIXXVDXIMAPRDALLTGCSMNQRICTM 562
           +R  V+LS EE E R LL  EW+RYK  ++  D+  +      R+  L            
Sbjct: 72  QRAKVKLSEEEEEERILLLKEWSRYKMQQHKEDLQRLQEQARCREEALKELKKTSEFLYK 131

Query: 563 XLXMPGLXLLXXTXSGXVATPPHQG 637
                   L      G   TPP  G
Sbjct: 132 EAIKADKTLFPLQLRGPTHTPPLTG 156


>SB_58699| Best HMM Match : UCR_14kD (HMM E-Value=3.6e-37)
          Length = 116

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 141 FQLNRNISTTSALTFKITEQLWAEPMXXXXXIDPAIVKHAKSAVVRKLRNK 293
           F++ R I TT  + + + E+LW +P      +DP I K       R+L +K
Sbjct: 66  FRIVRAIDTTMKMKW-LPEELWTKPSEDVPYLDPVIQKVKAERKERELWDK 115


>SB_58669| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3038

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 311 SSQASEFVSQFSYDGALRVFNNSRIYFL 228
           S   S++VS+ +Y   LR  NN   YF+
Sbjct: 351 SGMGSDYVSELNYTSTLRELNNKLPYFM 378


>SB_6584| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.01)
          Length = 742

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 311 SSQASEFVSQFSYDGALRVFNNSRIYFL 228
           S   S++VS+ +Y   LR  NN   YF+
Sbjct: 536 SGMGSDYVSELNYTSTLRELNNKLPYFM 563


>SB_59206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 341 THQLVSTV*HSSQAS-EFVSQFSYDGALRVFNN 246
           T Q+++T    S A+ +FV   S+DG  ++FNN
Sbjct: 117 TSQVLTTAEDVSSATIDFVGDISFDGIQKIFNN 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,514,803
Number of Sequences: 59808
Number of extensions: 230223
Number of successful extensions: 381
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)