Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060210.seq
         (642 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF034091-1|AAC70904.1|  206|Homo sapiens nuclear localization si...    44   6e-04
CR456532-1|CAG30418.1|  206|Homo sapiens NLVCF protein.                43   0.001
BC009707-1|AAH09707.1|  206|Homo sapiens mitochondrial ribosomal...    43   0.001
AJ295637-1|CAC00535.1|  206|Homo sapiens URIM protein protein.         43   0.001

>AF034091-1|AAC70904.1|  206|Homo sapiens nuclear localization
           signal containing protein deleted in Velo-Cardio-Facial
           sy protein.
          Length = 206

 Score = 43.6 bits (98), Expect = 6e-04
 Identities = 21/52 (40%), Positives = 33/52 (63%)
 Frame = +2

Query: 317 RQLKPIDELEVPLHLMDSLKKYKRPPVQLSVEEIEARELLQXEWARYKRDEY 472
           ++L PI++   PL  +D  K  +RP V+L+ EE E R LL  +W+ YK+ E+
Sbjct: 80  QELIPIEDFITPLKFLD--KARERPQVELTFEETERRALLLKKWSLYKQQEH 129


>CR456532-1|CAG30418.1|  206|Homo sapiens NLVCF protein.
          Length = 206

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 21/51 (41%), Positives = 32/51 (62%)
 Frame = +2

Query: 317 RQLKPIDELEVPLHLMDSLKKYKRPPVQLSVEEIEARELLQXEWARYKRDE 469
           ++L PI++   PL  +D  K  +RP V+L+ EE E R LL  +W+ YK+ E
Sbjct: 80  QELIPIEDFITPLKFLD--KARERPQVELTFEETERRALLLKKWSLYKQQE 128


>BC009707-1|AAH09707.1|  206|Homo sapiens mitochondrial ribosomal
           protein L40 protein.
          Length = 206

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 21/51 (41%), Positives = 32/51 (62%)
 Frame = +2

Query: 317 RQLKPIDELEVPLHLMDSLKKYKRPPVQLSVEEIEARELLQXEWARYKRDE 469
           ++L PI++   PL  +D  K  +RP V+L+ EE E R LL  +W+ YK+ E
Sbjct: 80  QELIPIEDFITPLKFLD--KARERPQVELTFEETERRALLLKKWSLYKQQE 128


>AJ295637-1|CAC00535.1|  206|Homo sapiens URIM protein protein.
          Length = 206

 Score = 42.7 bits (96), Expect = 0.001
 Identities = 21/51 (41%), Positives = 32/51 (62%)
 Frame = +2

Query: 317 RQLKPIDELEVPLHLMDSLKKYKRPPVQLSVEEIEARELLQXEWARYKRDE 469
           ++L PI++   PL  +D  K  +RP V+L+ EE E R LL  +W+ YK+ E
Sbjct: 80  QELIPIEDFITPLKFLD--KARERPQVELTFEETERRALLLKKWSLYKQQE 128


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,230,434
Number of Sequences: 237096
Number of extensions: 1078285
Number of successful extensions: 1371
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)