Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060210.seq
         (642 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071609-1|AAL49231.1|  196|Drosophila melanogaster RE65766p pro...    79   7e-15
AE014297-1288|AAF54629.1|  196|Drosophila melanogaster CG5242-PA...    79   7e-15
AY051772-1|AAK93196.1|  673|Drosophila melanogaster LD29879p pro...    32   0.57 
AE013599-3917|AAF47240.1|  673|Drosophila melanogaster CG4707-PA...    32   0.57 

>AY071609-1|AAL49231.1|  196|Drosophila melanogaster RE65766p
           protein.
          Length = 196

 Score = 78.6 bits (185), Expect = 7e-15
 Identities = 41/106 (38%), Positives = 56/106 (52%)
 Frame = +2

Query: 311 NARQLKPIDELEVPLHLMDSLKKYKRPPVQLSVEEIEARELLQXEWARYKRDEYVNDIXX 490
           NARQLKP+DELEVPL L+D   K +R    L+++++E R LL+ +WA YK DE V D   
Sbjct: 70  NARQLKPVDELEVPLELIDEKDKRQRKLAPLTIDQLEERALLKKQWAHYKHDERVADFQI 129

Query: 491 VDXIMAPRDALLTGCSMNQRICTMXLXMPGLXLLXXTXSGXVATPP 628
           +D ++  ++  L                    LL     G VATPP
Sbjct: 130 IDRLVQAQNKALAELRRESEELYQAAIDIDPQLLPVAVKGPVATPP 175


>AE014297-1288|AAF54629.1|  196|Drosophila melanogaster CG5242-PA
           protein.
          Length = 196

 Score = 78.6 bits (185), Expect = 7e-15
 Identities = 41/106 (38%), Positives = 56/106 (52%)
 Frame = +2

Query: 311 NARQLKPIDELEVPLHLMDSLKKYKRPPVQLSVEEIEARELLQXEWARYKRDEYVNDIXX 490
           NARQLKP+DELEVPL L+D   K +R    L+++++E R LL+ +WA YK DE V D   
Sbjct: 70  NARQLKPVDELEVPLELIDEKDKRQRKLAPLTIDQLEERALLKKQWAHYKHDERVADFQI 129

Query: 491 VDXIMAPRDALLTGCSMNQRICTMXLXMPGLXLLXXTXSGXVATPP 628
           +D ++  ++  L                    LL     G VATPP
Sbjct: 130 IDRLVQAQNKALAELRRESEELYQAAIDIDPQLLPVAVKGPVATPP 175


>AY051772-1|AAK93196.1|  673|Drosophila melanogaster LD29879p
           protein.
          Length = 673

 Score = 32.3 bits (70), Expect = 0.57
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 6/41 (14%)
 Frame = +2

Query: 344 EVPLHLMDSLKKYKR------PPVQLSVEEIEARELLQXEW 448
           E+P  ++   KKY++      PPV+LS EEIE R+L Q E+
Sbjct: 281 EIPKRVVVKPKKYRKREKPLVPPVRLSREEIERRKLQQDEY 321


>AE013599-3917|AAF47240.1|  673|Drosophila melanogaster CG4707-PA
           protein.
          Length = 673

 Score = 32.3 bits (70), Expect = 0.57
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 6/41 (14%)
 Frame = +2

Query: 344 EVPLHLMDSLKKYKR------PPVQLSVEEIEARELLQXEW 448
           E+P  ++   KKY++      PPV+LS EEIE R+L Q E+
Sbjct: 281 EIPKRVVVKPKKYRKREKPLVPPVRLSREEIERRKLQQDEY 321


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,324,190
Number of Sequences: 53049
Number of extensions: 340235
Number of successful extensions: 665
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2703623850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)