Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060210.seq
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099916-4|AAC68778.1|  189|Caenorhabditis elegans Hypothetical ...    32   0.30 
Z50027-1|CAA90331.1|  583|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AL132898-3|CAC14412.1|  346|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z77652-5|CAB01118.2|  646|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AY652942-1|AAT73709.1|  684|Caenorhabditis elegans guanylate cyc...    28   6.5  
AJ133597-1|CAC35530.1|  684|Caenorhabditis elegans soluble guany...    28   6.5  

>AF099916-4|AAC68778.1|  189|Caenorhabditis elegans Hypothetical
           protein F54C4.1 protein.
          Length = 189

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 12/48 (25%), Positives = 31/48 (64%)
 Frame = +2

Query: 311 NARQLKPIDELEVPLHLMDSLKKYKRPPVQLSVEEIEARELLQXEWAR 454
           ++++ KP+DEL + +    ++ + +RP  +L++E+I+ R +   ++ R
Sbjct: 64  HSKKPKPVDELTLDVKSAKNIGERRRPRTELTLEQIDERAIALKDYTR 111


>Z50027-1|CAA90331.1|  583|Caenorhabditis elegans Hypothetical
           protein C39B10.1 protein.
          Length = 583

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 336 MSWRFHFT*WIHSKNINGLLSSCRSKKSKPASYS-RXNGLVTNVM 467
           + W F+   W+H+     +    RSK +   ++S R NGL+T V+
Sbjct: 10  IDWCFNMEMWLHTMATQNISQQMRSKYAHYKTFSYRYNGLLTLVL 54


>AL132898-3|CAC14412.1|  346|Caenorhabditis elegans Hypothetical
           protein Y59A8B.4 protein.
          Length = 346

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 323 LKPIDELEVPLHLMDS-LKKYKRPPVQLSVE 412
           L PI  +E+P+HL+ S +  +K PP   SV+
Sbjct: 19  LHPIAMIEIPIHLLASYIVIFKTPPTMTSVK 49


>Z77652-5|CAB01118.2|  646|Caenorhabditis elegans Hypothetical
           protein C06B3.8 protein.
          Length = 646

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 500 SCRLVQCRSHIH-HVCNEPILSG 435
           SC+LVQC S +H H+ NE +  G
Sbjct: 206 SCKLVQCGSELHNHIPNELLQPG 228


>AY652942-1|AAT73709.1|  684|Caenorhabditis elegans guanylate
           cyclase-like protein protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 500 SCRLVQCRSHIH-HVCNEPILSG 435
           SC+LVQC S +H H+ NE +  G
Sbjct: 244 SCKLVQCGSELHNHIPNELLQPG 266


>AJ133597-1|CAC35530.1|  684|Caenorhabditis elegans soluble
           guanylate cyclase protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 500 SCRLVQCRSHIH-HVCNEPILSG 435
           SC+LVQC S +H H+ NE +  G
Sbjct: 244 SCKLVQCGSELHNHIPNELLQPG 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,085,032
Number of Sequences: 27780
Number of extensions: 182893
Number of successful extensions: 386
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)