Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060209.seq
         (659 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein ...    28   6.3  
At3g09320.1 68416.m01106 zinc finger (DHHC type) family protein ...    27   8.4  
At1g43720.1 68414.m05023 hypothetical protein                          27   8.4  
At1g17360.1 68414.m02116 COP1-interacting protein-related simila...    27   8.4  

>At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein low
           similarity to Golgi-specific DHHC zinc figer protein
           [Mus musculus] GI:21728103; contains Pfam profile
           PF01529: DHHC zinc finger domain
          Length = 477

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 76  LRRRGDFCDWTHKFFGPGNFKIFHMFIGFARCVC-FVF 186
           ++R    C W  +  G  N++ F MFI  +  +C +VF
Sbjct: 169 VQRFDHHCPWVGQCIGVRNYRFFFMFISTSTTLCIYVF 206


>At3g09320.1 68416.m01106 zinc finger (DHHC type) family protein
           similar to Golgi-specific DHHC zinc figer protein [Mus
           musculus] GI:21728103; contains Pfam profile PF01529:
           DHHC zinc finger domain
          Length = 286

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 82  RRGDFCDWTHKFFGPGNFKIFHMFIGFARCVC 177
           R    C W +   G  N+K+F +F+ +A   C
Sbjct: 122 RMDHHCIWINNCVGHTNYKVFFVFVVYAVTAC 153


>At1g43720.1 68414.m05023 hypothetical protein 
          Length = 314

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 225 KRCGRRNTVRICVTHATACS 284
           KRC   NT +  V HAT CS
Sbjct: 250 KRCTMENTTKCTVGHATKCS 269


>At1g17360.1 68414.m02116 COP1-interacting protein-related similar
           to COP1-Interacting Protein 7 (CIP7) (GI:3327870)
           [Arabidopsis thaliana]
          Length = 1032

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -3

Query: 171 ATRKTNEHMKNFKISRT--KKFMRPITKVSSSPQCIYVKLLTGQDI 40
           +TR+  E  ++F  SRT  KK+  PI+ + S  +    KL++GQ I
Sbjct: 609 STRQRAEKFRSFN-SRTSSKKYQHPISSLQSEEENEKDKLVSGQSI 653


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,530,320
Number of Sequences: 28952
Number of extensions: 198850
Number of successful extensions: 357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)