Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060207.seq
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 108 8e-25
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 107 1e-24
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 46 6e-06
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 29 0.43
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.3
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 1.7
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 27 3.0
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 26 4.0
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 26 4.0
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 25 7.0
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 9.3
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 9.3
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 108 bits (259), Expect = 8e-25
Identities = 55/75 (73%), Positives = 66/75 (88%)
Frame = +1
Query: 256 VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSG 435
V+RP+LI+K+ IPVVMAGIIAIYGLVV+VLI+G L++ + LY GFI LGAGL+VG +G
Sbjct: 45 VLRPDLIVKNTIPVVMAGIIAIYGLVVSVLISGNLKQILS--LYSGFIQLGAGLSVGLAG 102
Query: 436 LAAGFAIGIVGDAGV 480
LAAGFAIGIVGDAGV
Sbjct: 103 LAAGFAIGIVGDAGV 117
Score = 62.5 bits (145), Expect = 5e-11
Identities = 25/37 (67%), Positives = 32/37 (86%)
Frame = +2
Query: 143 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 253
P+Y PFFGVMG +AI+F++ GAAYGTAK+G GI+AM
Sbjct: 7 PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGISAM 43
Score = 28.7 bits (61), Expect = 0.75
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 495 QQPKVFVGMILILIF 539
QQP++FV MILILIF
Sbjct: 122 QQPRLFVAMILILIF 136
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 107 bits (258), Expect = 1e-24
Identities = 48/73 (65%), Positives = 62/73 (84%)
Frame = +1
Query: 262 RPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLA 441
RPE++MKS+IPVVM+GII +YGLV++VLIAG + +Y L+ GFIHL AGLAVG +G+A
Sbjct: 47 RPEIVMKSLIPVVMSGIIGVYGLVMSVLIAGDMSPDNDYSLFSGFIHLSAGLAVGLTGVA 106
Query: 442 AGFAIGIVGDAGV 480
AG+AIG+VGD GV
Sbjct: 107 AGYAIGVVGDRGV 119
Score = 50.0 bits (114), Expect = 3e-07
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +2
Query: 143 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 253
PIY FFG G ++++FS LGA YGTA +G GIAA+
Sbjct: 7 PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAV 43
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +3
Query: 492 LQQPKVFVGMILILIF 539
++Q ++FV M+LILIF
Sbjct: 123 MRQDRIFVSMVLILIF 138
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 45.6 bits (103), Expect = 6e-06
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Frame = +1
Query: 256 VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQE--PANY----PLYKGFIHLGAGL 417
V P + K++I ++ ++AIY L++A++ + + + PA + Y GF G+
Sbjct: 77 VKAPRIKTKNLISIIFCEVVAIYSLIIAIVFSAKINDINPAGFYTKSHYYTGFALFWGGI 136
Query: 418 AVGFSGLAAGFAIGIVGDA 474
VG L G +GI G +
Sbjct: 137 TVGLCNLICGVCVGITGSS 155
Score = 29.1 bits (62), Expect = 0.57
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 161 FGVMGAASAIIFSALGAAYGTAKSGTGI 244
+G++G AS + F +GAA+G GT I
Sbjct: 45 WGLLGIASCVAFGIIGAAWGIFICGTSI 72
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 29.5 bits (63), Expect = 0.43
Identities = 20/65 (30%), Positives = 29/65 (44%)
Frame = +1
Query: 286 IIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIV 465
II +AG+IA + +++ IAG + G ++ G L LA GF I
Sbjct: 193 IITATIAGVIAAFSVIITATIAGVIAAMV------GILYFGHWLVYKILILAFGFKIVTS 246
Query: 466 GDAGV 480
GD V
Sbjct: 247 GDVCV 251
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.3
Identities = 23/57 (40%), Positives = 27/57 (47%)
Frame = -3
Query: 473 ASPTMPMAKPAARPENPTAKPAPKWMNPL*RG*LAGSWRAPAIRTATTRP*MAIIPA 303
A P++PM PAA P P+A AP PL AG AP + A P A PA
Sbjct: 435 APPSLPMGAPAAPPLPPSAPIAP----PL----PAGMPAAPPLPPAAPAPPPAPAPA 483
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 482 GTPASPTMPMAKPAARPENPTAKPAP 405
G PA+P +P A PA P A AP
Sbjct: 462 GMPAAPPLPPAAPAPPPAPAPAPAAP 487
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 430 SGLAAGFAIGIVGDAGVPWYCFSS 501
SGLA GF + I D GV +YC ++
Sbjct: 860 SGLAYGFNMSIDVDGGVLYYCINT 883
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 101 TGPKNCDDYLHTLTPRNYFCTDK 33
TG KNCDD+L +P + D+
Sbjct: 402 TGNKNCDDHLRDKSPERRYRYDR 424
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 399 DEPFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRND 286
DEPF+K +L+ SN++S+ VD N+ D +D
Sbjct: 48 DEPFLKSKYMDILQKISNRESNVINVDLNDLYEFDPSD 85
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 26.2 bits (55), Expect = 4.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 415 LAVGFSGLAAGFAIGIVGDAGVPW 486
+A+G +GLA G IG+ G P+
Sbjct: 173 IAMGLAGLAGGALIGLTGGLAAPF 196
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 7.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 101 TGPKNCDDYLHTL 63
TGP N DDY+H +
Sbjct: 369 TGPSNTDDYIHRI 381
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 9.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -1
Query: 466 PRCLWRNRQPDQRILQPNQ 410
PRCLW +Q +++PN+
Sbjct: 582 PRCLWTGKQVFTVLMKPNR 600
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 485 HGTPASPTMPMAKPAARPENPTAKPAPKWMNP 390
+GTP + P+ PAA A+P P +P
Sbjct: 262 NGTPNTLASPVTLPAANSAVQNAQPVPMTSSP 293
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,842
Number of Sequences: 5004
Number of extensions: 57084
Number of successful extensions: 194
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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