Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060207.seq
(643 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.) 117 9e-27
SB_19553| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041) 32 0.46
SB_16778| Best HMM Match : rve (HMM E-Value=2.9e-22) 32 0.46
SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.60
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_47161| Best HMM Match : rve (HMM E-Value=1.8e-22) 31 1.1
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029) 30 1.8
SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13) 30 1.8
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029) 30 1.8
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6) 29 2.4
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69) 29 2.4
SB_5993| Best HMM Match : EGF_2 (HMM E-Value=9e-14) 29 3.2
SB_51309| Best HMM Match : LicD (HMM E-Value=0.0069) 29 4.2
SB_38437| Best HMM Match : VWA (HMM E-Value=0) 29 4.2
SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_41057| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_48617| Best HMM Match : Drf_FH1 (HMM E-Value=3.7) 28 7.4
SB_9739| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_2890| Best HMM Match : rve (HMM E-Value=0.044) 28 7.4
SB_50345| Best HMM Match : Cadherin (HMM E-Value=0) 27 9.8
SB_17285| Best HMM Match : rve (HMM E-Value=1.3e-16) 27 9.8
SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091) 27 9.8
SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25) 27 9.8
SB_45877| Best HMM Match : Borrelia_orfA (HMM E-Value=0.23) 27 9.8
SB_45729| Best HMM Match : rve (HMM E-Value=5.8e-21) 27 9.8
SB_36929| Best HMM Match : rve (HMM E-Value=1.2e-16) 27 9.8
>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 117 bits (281), Expect = 9e-27
Identities = 60/75 (80%), Positives = 66/75 (88%)
Frame = +1
Query: 256 VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSG 435
VMRPELIMKSIIPVVMAGIIAIYGLVVAVLI ++ + +Y LYK F+ LGAGL+VG SG
Sbjct: 45 VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIGSSISK--DYTLYKSFLDLGAGLSVGLSG 102
Query: 436 LAAGFAIGIVGDAGV 480
LAAGFAIGIVGDAGV
Sbjct: 103 LAAGFAIGIVGDAGV 117
Score = 65.3 bits (152), Expect = 4e-11
Identities = 30/39 (76%), Positives = 34/39 (87%)
Frame = +2
Query: 137 NNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 253
+ P Y FFGVMGA +A++FSALGAAYGTAKSGTGIAAM
Sbjct: 5 DQPSYVAFFGVMGATAAMVFSALGAAYGTAKSGTGIAAM 43
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3
Query: 495 QQPKVFVGMILILIF 539
QQP++FVGMILILIF
Sbjct: 122 QQPRLFVGMILILIF 136
>SB_19553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1744
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 545 SAKNKNKNHSXEYLRLLKQYHGTPASPT 462
+AK +NK++ E RLLK Y TP S T
Sbjct: 1561 TAKTENKSYKQEMQRLLKNYRATPHSTT 1588
>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
Length = 1155
Score = 31.9 bits (69), Expect = 0.46
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -3
Query: 503 RLLKQYHGTPASPTMPMAKPAARPENPTAKPAPKWMNPL 387
R L+ Y TPA PT+PMA A + P+ PA PL
Sbjct: 1089 RFLRAY--TPALPTIPMAPSGAPAKTPSVAPAAPSPRPL 1125
>SB_16778| Best HMM Match : rve (HMM E-Value=2.9e-22)
Length = 419
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -3
Query: 545 SAKNKNKNHSXEYLRLLKQYHGTPASPT 462
+AK +NK++ E RLLK Y TP S T
Sbjct: 360 TAKTENKSYKQEMQRLLKNYRATPHSTT 387
>SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 31.5 bits (68), Expect = 0.60
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 406 GAGLAVGFSGLAAGFAIGIVG 468
GAG+ VGF LA G +G+VG
Sbjct: 46 GAGMTVGFCNLACGICVGLVG 66
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 31.1 bits (67), Expect = 0.80
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 288 HSCRHGGYYCHLRSGRGCPDCWCPPGASQLPPLQRV 395
+ CR+ G C + R P C CPPG QRV
Sbjct: 2981 YKCRYQGEVC-VTDSRNVPRCVCPPGCPPAEVSQRV 3015
>SB_47161| Best HMM Match : rve (HMM E-Value=1.8e-22)
Length = 1046
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 545 SAKNKNKNHSXEYLRLLKQYHGTPASPT 462
+AK +NK++ E RLL+ Y TP S T
Sbjct: 866 TAKTENKSYKQEMQRLLRNYRATPHSTT 893
>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 453 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 322
G+ +T SYS S+QV +PF V +QD H+QT+
Sbjct: 713 GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQPIKQHQDKHNQTL 756
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -2
Query: 453 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 322
G+ +T SYS S+QV +PF V +QD H+QT+
Sbjct: 44 GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQLIKQHQDKHNQTL 87
>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 346
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -3
Query: 503 RLLKQYHGTPASPTMPMAKPAARPENPTAKPAPKWMNPL 387
R L+ Y TPA PT+P A A + P+ PA PL
Sbjct: 280 RFLRAY--TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 316
>SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)
Length = 347
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -3
Query: 503 RLLKQYHGTPASPTMPMAKPAARPENPTAKPAPKWMNPL 387
R L+ Y TPA PT+P A A + P+ PA PL
Sbjct: 284 RFLRAY--TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 320
>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 1026
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = -3
Query: 503 RLLKQYHGTPASPTMPMAKPAARPENPTAKPAPKWMNPL 387
R L+ Y TPA PT+P A A + P+ PA PL
Sbjct: 960 RFLRAY--TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 996
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 472 HLPRCLWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPG-GHQQSGQ 338
++ +++ Q +Q +L NQ PS T+ GGS G GH GQ
Sbjct: 2347 YVSHTVFKREQDEQLLLWLNQRPSDWTMTWGGSGTIYGWGHNHRGQ 2392
>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
Length = 156
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 476 PASPTMPMAKPAARPENPTAKPAPK 402
PA+P P A PAA P PTA PA +
Sbjct: 52 PAAPVTPTAAPAA-PVTPTAAPAAR 75
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -3
Query: 476 PASPTMPMAKPAARPENPTAKPA 408
PA+P P A PAAR PTA PA
Sbjct: 62 PAAPVTPTAAPAAR-VTPTAAPA 83
>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 288 HSCRHGGYYCHLRSGRGCPDCW 353
+SC G YYC++ RG DCW
Sbjct: 348 YSCNSGHYYCYV---RGSNDCW 366
>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
Length = 404
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -3
Query: 476 PASPTMPMAKPAARPENPTAKPAPK 402
PA+P P A PAA P PTA PA +
Sbjct: 209 PAAPVTPTAAPAA-PVTPTAAPAAR 232
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -3
Query: 476 PASPTMPMAKPAARPENPTAKPA 408
PA+P P A PAAR PTA PA
Sbjct: 219 PAAPVTPTAAPAAR-VTPTAAPA 240
>SB_5993| Best HMM Match : EGF_2 (HMM E-Value=9e-14)
Length = 360
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +3
Query: 222 LPSQELVLPPCGDEA*ADHEV--DHSCRHGGYYCHLRSGRGCPDCWCPPG 365
LPS LP C +H + + C YCH ++GR C C PG
Sbjct: 250 LPSHGFPLPMCSP---GNHGIQCNSKCTCASVYCHAQTGR----CMCSPG 292
>SB_51309| Best HMM Match : LicD (HMM E-Value=0.0069)
Length = 466
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/28 (60%), Positives = 18/28 (64%)
Frame = +3
Query: 141 IQSTDPSLELWGRRLLSSSAPWELPMEL 224
I S D LELWG R LS+SA LP EL
Sbjct: 355 ILSGDFYLELWGARELSNSALNFLPAEL 382
>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
Length = 3445
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3
Query: 503 RLLKQYHGTPASPTMPMAKPAARPENPTAKPAP 405
RL ++ TP PT +P RP PT KPAP
Sbjct: 1419 RLCREVRPTPTKPTKRPTRP-TRPPKPT-KPAP 1449
>SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1222
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 503 RLLKQYHGTPASPTMPMAKPAARPENPTAKPA 408
R L+ Y TPA PT+P A A + P+ PA
Sbjct: 1104 RFLRAY--TPALPTIPQAPSGAPAKTPSVAPA 1133
>SB_41057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -3
Query: 557 TPNTSAKNKNKNHSXEYLRLLKQYHGTPASPTMPMAKPAARPENPTAKPAPK 402
TP+ AK+ K + + K+ P + +AKP + PTAK A K
Sbjct: 240 TPSNKAKSPKKPAPKKATKSPKKAAKKPVAKKPAVAKPKKATKKPTAKKAAK 291
>SB_48617| Best HMM Match : Drf_FH1 (HMM E-Value=3.7)
Length = 477
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 503 RLLKQYHGTPASPTMPMAKPAARPENPTAKPA 408
R L+ Y TPA PT+P A A + P+ PA
Sbjct: 182 RFLRAY--TPALPTIPQAPSGAPAKTPSMAPA 211
>SB_9739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1552
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 503 RLLKQYHGTPASPTMPMAKPAARPENPTAKPA 408
R L+ Y TPA PT+P A A + P+ PA
Sbjct: 1448 RFLRAY--TPALPTIPQAPSGAPAKTPSMAPA 1477
>SB_2890| Best HMM Match : rve (HMM E-Value=0.044)
Length = 336
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 503 RLLKQYHGTPASPTMPMAKPAARPENPTAKPA 408
R L+ Y TPA PT+P A A + P+ PA
Sbjct: 218 RFLRAY--TPALPTIPQAPSGAPAKTPSMAPA 247
>SB_50345| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 1021
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/63 (30%), Positives = 25/63 (39%)
Frame = -2
Query: 438 QTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDRLHDQLRPH 259
Q E Y Q + E F G +G S+ S T R++D N+ H PH
Sbjct: 917 QYGEIYPQGTRPSSEGFSSGDELDSGKGDSSIASSPYTSHTLGRRYNDHNNHSHTAFNPH 976
Query: 258 HHM 250
H M
Sbjct: 977 HTM 979
>SB_17285| Best HMM Match : rve (HMM E-Value=1.3e-16)
Length = 560
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 479 TPASPTMPMAKPAARPENPTAKPA 408
TPA PT+P A A E P PA
Sbjct: 448 TPALPTIPQAPSGAPAETPPVAPA 471
>SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)
Length = 497
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 348 NQDSHDQTVDGNNTRHDDRNDRLHDQL 268
N D+ D D NN DD ND +D +
Sbjct: 140 NDDNDDNNNDSNNNSDDDGNDDTNDYI 166
>SB_4966| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1044
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 482 GTPASPTMPMAKPAARPENPTAKPA 408
GT +P A PAA E+PTA P+
Sbjct: 822 GTTTAPEGTTAAPAATTESPTASPS 846
>SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25)
Length = 1641
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 545 SAKNKNKNHSXEYLRLLKQYHGTPASPT 462
+AK +NK++ E LL+ Y TP S T
Sbjct: 1519 TAKTENKSYKQEMQWLLRNYRATPHSTT 1546
>SB_45877| Best HMM Match : Borrelia_orfA (HMM E-Value=0.23)
Length = 734
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = -3
Query: 584 MADRLSP*KTPNTSAKNKNKNHSXEYLRLLKQYHGTPASPTMPMAKPAARPENPTAKPAP 405
+ + L+ K N+SAKN+ K H+ + K S T +P P PT P P
Sbjct: 278 LENALNAGKQRNSSAKNETKTHTED----AKLDDSELESSTPEDGRPKTVPVKPTQSPVP 333
>SB_45729| Best HMM Match : rve (HMM E-Value=5.8e-21)
Length = 611
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 545 SAKNKNKNHSXEYLRLLKQYHGTPASPT 462
+AK +NK++ E LL+ Y TP S T
Sbjct: 436 TAKTENKSYKQEMQWLLRNYRATPHSTT 463
>SB_36929| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 913
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 503 RLLKQYHGTPASPTMPMAKPAARPENPTAKPA 408
R L+ Y TPA PT+P A A + P+ PA
Sbjct: 806 RFLRAY--TPALPTIPKAPSGAPAKTPSMAPA 835
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,509,923
Number of Sequences: 59808
Number of extensions: 475152
Number of successful extensions: 1717
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1698
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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