Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060207.seq
(643 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical pr... 105 2e-23
AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h at... 105 2e-23
AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein ... 105 2e-23
AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein. 105 2e-23
Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical pr... 94 9e-20
AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein. 94 9e-20
Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical pr... 43 2e-04
AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein. 43 2e-04
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 33 0.13
AC006689-3|AAO21400.1| 310|Caenorhabditis elegans Hypothetical ... 32 0.30
AC006689-2|AAF39970.2| 341|Caenorhabditis elegans Hypothetical ... 32 0.30
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 31 0.53
U88308-4|AAB42323.1| 299|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical pr... 29 2.8
U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical pr... 29 2.8
AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical ... 29 2.8
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 29 3.7
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 29 3.7
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 29 3.7
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 29 3.7
Z81504-2|CAB04119.1| 351|Caenorhabditis elegans Hypothetical pr... 28 4.9
AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm rec... 28 4.9
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 28 6.5
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 28 6.5
AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical ... 28 6.5
AC006810-8|AAK84621.1| 364|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical
protein R10E11.2 protein.
Length = 161
Score = 105 bits (253), Expect = 2e-23
Identities = 53/80 (66%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Frame = +1
Query: 244 CRHVVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGAL-QEPANYPLYKGFIHLGAGLA 420
C VMRPELIMKS+IPV+MAGII IYGLVVA+++ G + A Y L KGF HL AGL
Sbjct: 45 CSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLT 104
Query: 421 VGFSGLAAGFAIGIVGDAGV 480
G GL AG+AIGIVGDAGV
Sbjct: 105 CGLCGLGAGYAIGIVGDAGV 124
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = +2
Query: 149 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 253
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSM 47
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3
Query: 495 QQPKVFVGMILILIF 539
QQP++FVGMILILIF
Sbjct: 129 QQPRLFVGMILILIF 143
>AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h
atpase protein 3 protein.
Length = 161
Score = 105 bits (253), Expect = 2e-23
Identities = 53/80 (66%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Frame = +1
Query: 244 CRHVVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGAL-QEPANYPLYKGFIHLGAGLA 420
C VMRPELIMKS+IPV+MAGII IYGLVVA+++ G + A Y L KGF HL AGL
Sbjct: 45 CSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLT 104
Query: 421 VGFSGLAAGFAIGIVGDAGV 480
G GL AG+AIGIVGDAGV
Sbjct: 105 CGLCGLGAGYAIGIVGDAGV 124
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = +2
Query: 149 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 253
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSM 47
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3
Query: 495 QQPKVFVGMILILIF 539
QQP++FVGMILILIF
Sbjct: 129 QQPRLFVGMILILIF 143
>AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein
protein.
Length = 161
Score = 105 bits (253), Expect = 2e-23
Identities = 53/80 (66%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Frame = +1
Query: 244 CRHVVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGAL-QEPANYPLYKGFIHLGAGLA 420
C VMRPELIMKS+IPV+MAGII IYGLVVA+++ G + A Y L KGF HL AGL
Sbjct: 45 CSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLT 104
Query: 421 VGFSGLAAGFAIGIVGDAGV 480
G GL AG+AIGIVGDAGV
Sbjct: 105 CGLCGLGAGYAIGIVGDAGV 124
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = +2
Query: 149 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 253
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSM 47
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3
Query: 495 QQPKVFVGMILILIF 539
QQP++FVGMILILIF
Sbjct: 129 QQPRLFVGMILILIF 143
>AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein.
Length = 161
Score = 105 bits (253), Expect = 2e-23
Identities = 53/80 (66%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Frame = +1
Query: 244 CRHVVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGAL-QEPANYPLYKGFIHLGAGLA 420
C VMRPELIMKS+IPV+MAGII IYGLVVA+++ G + A Y L KGF HL AGL
Sbjct: 45 CSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLT 104
Query: 421 VGFSGLAAGFAIGIVGDAGV 480
G GL AG+AIGIVGDAGV
Sbjct: 105 CGLCGLGAGYAIGIVGDAGV 124
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = +2
Query: 149 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 253
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSM 47
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/15 (86%), Positives = 15/15 (100%)
Frame = +3
Query: 495 QQPKVFVGMILILIF 539
QQP++FVGMILILIF
Sbjct: 129 QQPRLFVGMILILIF 143
>Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical
protein R10E11.8 protein.
Length = 169
Score = 93.9 bits (223), Expect = 9e-20
Identities = 45/76 (59%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Frame = +1
Query: 256 VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFS 432
V RP+L+MK+IIPVVMAGI+AIYGLVVAV+++G ++ ANY + F GL G
Sbjct: 57 VARPDLVMKAIIPVVMAGIVAIYGLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLC 116
Query: 433 GLAAGFAIGIVGDAGV 480
GL AG+AIGI GDAGV
Sbjct: 117 GLGAGYAIGIAGDAGV 132
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = +2
Query: 146 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 253
+YGPFFG +G SA+ F+A G+AYGTAK+GTGIA+M
Sbjct: 20 MYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIASM 55
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +3
Query: 489 LLQQPKVFVGMILILIF 539
L QQP++FVGMILILIF
Sbjct: 135 LSQQPRMFVGMILILIF 151
>AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein.
Length = 169
Score = 93.9 bits (223), Expect = 9e-20
Identities = 45/76 (59%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Frame = +1
Query: 256 VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFS 432
V RP+L+MK+IIPVVMAGI+AIYGLVVAV+++G ++ ANY + F GL G
Sbjct: 57 VARPDLVMKAIIPVVMAGIVAIYGLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLC 116
Query: 433 GLAAGFAIGIVGDAGV 480
GL AG+AIGI GDAGV
Sbjct: 117 GLGAGYAIGIAGDAGV 132
Score = 57.6 bits (133), Expect = 7e-09
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = +2
Query: 146 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 253
+YGPFFG +G SA+ F+A G+AYGTAK+GTGIA+M
Sbjct: 20 MYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIASM 55
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +3
Query: 489 LLQQPKVFVGMILILIF 539
L QQP++FVGMILILIF
Sbjct: 135 LSQQPRMFVGMILILIF 151
>Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical
protein T01H3.1 protein.
Length = 214
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 14/85 (16%)
Frame = +1
Query: 256 VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQE--PANYP------------LYKG 393
V P + K+++ ++ +AI+G+++A + G L E + P L G
Sbjct: 83 VKAPRIRTKNLVSIIFCEAVAIFGIIMAFVFVGKLAEFRREDLPDTEDGMAILARNLASG 142
Query: 394 FIHLGAGLAVGFSGLAAGFAIGIVG 468
++ G GL VG S L G A+GIVG
Sbjct: 143 YMIFGGGLTVGLSNLVCGLAVGIVG 167
>AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein.
Length = 214
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 14/85 (16%)
Frame = +1
Query: 256 VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQE--PANYP------------LYKG 393
V P + K+++ ++ +AI+G+++A + G L E + P L G
Sbjct: 83 VKAPRIRTKNLVSIIFCEAVAIFGIIMAFVFVGKLAEFRREDLPDTEDGMAILARNLASG 142
Query: 394 FIHLGAGLAVGFSGLAAGFAIGIVG 468
++ G GL VG S L G A+GIVG
Sbjct: 143 YMIFGGGLTVGLSNLVCGLAVGIVG 167
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 282 VDHSCRHGGYYCHLRSGRGCPDCWCPPG 365
V H C +GG+ + S R P C CP G
Sbjct: 1800 VGHECLNGGFCSYANSNRSLPHCICPSG 1827
>AC006689-3|AAO21400.1| 310|Caenorhabditis elegans Hypothetical
protein T22E7.1b protein.
Length = 310
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 381 GVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDR 283
GVVG +G+ D H+ T G N+ HD + D+
Sbjct: 12 GVVGAYAQGSCRTDQHEMTCRGKNSLHDLKKDQ 44
>AC006689-2|AAF39970.2| 341|Caenorhabditis elegans Hypothetical
protein T22E7.1a protein.
Length = 341
Score = 32.3 bits (70), Expect = 0.30
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 381 GVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDR 283
GVVG +G+ D H+ T G N+ HD + D+
Sbjct: 12 GVVGAYAQGSCRTDQHEMTCRGKNSLHDLKKDQ 44
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Frame = +3
Query: 60 SECVQIVITVFGTCKYSHI*QTKWLKIIQS-------TDPSLELWGRRLLSSSAPWELPM 218
SE V ++ F TC + + T + +QS ++ W R +L +PW L M
Sbjct: 283 SEAVPLLGVFFHTCNFISVLATSFTVYVQSFHFRNQHVHERMDFWMRFILLEWSPWLLRM 342
Query: 219 ELPSQE 236
++P +E
Sbjct: 343 KMPDRE 348
>U88308-4|AAB42323.1| 299|Caenorhabditis elegans Hypothetical
protein C32E8.5 protein.
Length = 299
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = -2
Query: 483 RHACISHDAYGETGSQTRESYSQTSTQVDE-PFVKGVVGWLLEGTSNQDSHDQTVDGNNT 307
RH S + + S++R+ ++ T+ D+ P +K V E S+ DS + D
Sbjct: 10 RHRDRSPERRRRSRSRSRDRQTRRDTRRDDSPKIKREVKE--EQFSDNDSPRRRRDDRGG 67
Query: 306 RHDDRNDRLHDQLRPH 259
R DDR D D R H
Sbjct: 68 RRDDRRDNRRDDRRDH 83
>Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -3
Query: 503 RLLKQYHGTPASPTMPMAKPAARPENPTAKPAPK 402
+LL TPA PT+ AKPA +P P + PAPK
Sbjct: 40 KLLSGGAKTPARPTV--AKPAPKP-TPKSAPAPK 70
>U39645-2|AAA80365.2| 638|Caenorhabditis elegans Hypothetical
protein C14F11.2 protein.
Length = 638
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 557 TPNTSAKNKNKNHSXEYLRLLKQYHGTPASPTMPMAKPAARPENPTAKP 411
TP+ N N N+ E +L +P P++K A P+ PT +P
Sbjct: 384 TPDEQNNNNNNNNDNEKSKLSSSSLSSPGMGKKPISKVAPMPK-PTPRP 431
>AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -3
Query: 503 RLLKQYHGTPASPTMPMAKPAARPENPTAKPAPK 402
+LL TPA PT+ AKPA +P P + PAPK
Sbjct: 40 KLLSGGAKTPARPTV--AKPAPKP-TPKSAPAPK 70
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 312 YCHLRSGRGCPDCWCPPGASQ 374
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 294 CRHGGYYCHLRSGRGCPDCWCPPGASQ 374
C HG Y ++ SG GC +C C P S+
Sbjct: 915 CAHGFY--NITSGLGCQECNCDPLGSE 939
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 312 YCHLRSGRGCPDCWCPPGASQ 374
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 28.7 bits (61), Expect = 3.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 312 YCHLRSGRGCPDCWCPPGASQ 374
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>Z81504-2|CAB04119.1| 351|Caenorhabditis elegans Hypothetical
protein F15H9.2 protein.
Length = 351
Score = 28.3 bits (60), Expect = 4.9
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +1
Query: 157 LLWSYGGGVCYHLQRLGSCLWNCQVRNWYCRHVVMRPELIMKSIIPVVMAGIIAIYGLVV 336
+++ YG G+ H + R Y +H L+M+ +IP V+ II G+ +
Sbjct: 205 MVYGYGLGLGTHTMMILQRFRKSMSRQTYQQHKTALFSLVMQLLIPGVL--IIVPLGVCM 262
Query: 337 AVLIAG--ALQEPANYPLY 387
V++ G LQE A ++
Sbjct: 263 FVVVTGEVGLQEVATNTMF 281
>AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm
receptor protein 82 protein.
Length = 362
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 262 RPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLY 387
RPE ++ +VMA + AIY + +++ L NY LY
Sbjct: 35 RPEYGSYKLLMMVMATLYAIYSAIEVIILPSYLVFEYNYLLY 76
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +3
Query: 315 CHLRSGR-GCPDCWCPPGASQLPP 383
C L + R GCP C CPP PP
Sbjct: 933 CQLVNDRSGCPFCSCPPVKQASPP 956
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 294 CRHGGYYCHLRSGRGCPDCWCPPG-ASQLPPLQRVHPLGCWFG 419
C++GGY + C +C CPPG QL + + GC G
Sbjct: 331 CQNGGYI----NPNDCNNCKCPPGFGGQLCDVAGTNSNGCGAG 369
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 294 CRHGGYYCHLRSGRGCPDCWCPPG-ASQLPPLQRVHPLGCWFG 419
C++GGY + C +C CPPG QL + + GC G
Sbjct: 331 CQNGGYI----NPNDCNNCKCPPGFGGQLCDVAGTNSNGCGAG 369
>AC006651-1|AAF39870.4| 1138|Caenorhabditis elegans Hypothetical
protein H06I04.5 protein.
Length = 1138
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 500 LLKQYHGTPASPTMPMAKPAARPENPTAKPAPK 402
L+ + P+S +P A+P+A P KP PK
Sbjct: 660 LIMRKKSKPSSSEVPPAEPSAPEPKPAPKPDPK 692
>AC006810-8|AAK84621.1| 364|Caenorhabditis elegans Hypothetical
protein Y5H2B.1 protein.
Length = 364
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 137 FQPFCLLNVGVFTGPKNCDDYLHTLTPRNYFCTDKYGPSFADXLV 3
FQ C L+ ++ KN D+YLH Y+ + KY P+ + L+
Sbjct: 140 FQRACCLHKSPWSLEKNRDEYLH--LSGKYYQSWKYFPNMRNELI 182
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,586,321
Number of Sequences: 27780
Number of extensions: 343763
Number of successful extensions: 1289
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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