Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060207.seq
(643 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38920.1 68417.m05515 vacuolar ATP synthase 16 kDa proteolipi... 101 3e-22
At4g34720.1 68417.m04928 vacuolar ATP synthase 16 kDa proteolipi... 101 3e-22
At2g16510.1 68415.m01893 vacuolar ATP synthase 16 kDa proteolipi... 101 3e-22
At1g75630.1 68414.m08787 vacuolar ATP synthase 16 kDa proteolipi... 101 3e-22
At1g19910.1 68414.m02496 vacuolar ATP synthase 16 kDa proteolipi... 101 3e-22
At4g32530.1 68417.m04631 vacuolar ATP synthase, putative / V-ATP... 49 2e-06
At2g25610.1 68415.m03068 H+-transporting two-sector ATPase, C su... 49 2e-06
At2g40070.1 68415.m04923 expressed protein 32 0.28
At1g80480.1 68414.m09427 PRLI-interacting factor L, putative sim... 32 0.28
At5g56330.1 68418.m07031 carbonic anhydrase family protein conta... 29 2.0
At4g16980.1 68417.m02560 arabinogalactan-protein family similar ... 29 2.6
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 29 2.6
At5g19970.1 68418.m02377 expressed protein ; expression support... 29 3.5
At4g33970.1 68417.m04820 leucine-rich repeat family protein / ex... 29 3.5
At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding ... 28 6.1
At3g04570.1 68416.m00485 DNA-binding protein-related contains Pf... 28 6.1
At2g29050.1 68415.m03531 rhomboid family protein contains PFAM d... 27 8.0
At2g19450.1 68415.m02272 diacylglycerol O-acyltransferase / acyl... 27 8.0
At2g17820.1 68415.m02064 histidine kinase 1 99% identical to GP:... 27 8.0
At1g15730.1 68414.m01887 PRLI-interacting factor L, putative str... 27 8.0
>At4g38920.1 68417.m05515 vacuolar ATP synthase 16 kDa proteolipid
subunit 3 / V-ATPase 16 kDa proteolipid subunit 3
(AVAP3) (AVA-P3) identical to SP|P59227 Vacuolar ATP
synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14)
(V-ATPase 16 kDa proteolipid subunit 1/3/5) {Arabidopsis
thaliana}; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 164
Score = 101 bits (243), Expect = 3e-22
Identities = 47/76 (61%), Positives = 62/76 (81%), Gaps = 1/76 (1%)
Frame = +1
Query: 256 VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPA-NYPLYKGFIHLGAGLAVGFS 432
VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+ + A +Y L+ G+ HL +GLA G +
Sbjct: 45 VMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLA 104
Query: 433 GLAAGFAIGIVGDAGV 480
GL+AG AIGIVGDAGV
Sbjct: 105 GLSAGMAIGIVGDAGV 120
Score = 57.2 bits (132), Expect = 9e-09
Identities = 23/33 (69%), Positives = 30/33 (90%)
Frame = +2
Query: 155 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 253
PFFG +GAA+A++FS +GAAYGTAKSG G+A+M
Sbjct: 11 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASM 43
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 495 QQPKVFVGMILILIF 539
QQPK+FVGMILILIF
Sbjct: 125 QQPKLFVGMILILIF 139
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/30 (30%), Positives = 22/30 (73%)
Frame = +1
Query: 262 RPELIMKSIIPVVMAGIIAIYGLVVAVLIA 351
+P+L + I+ ++ A +A+YGL+V ++++
Sbjct: 126 QPKLFVGMILILIFAEALALYGLIVGIILS 155
>At4g34720.1 68417.m04928 vacuolar ATP synthase 16 kDa proteolipid
subunit 1 / V-ATPase 16 kDa proteolipid subunit 1
(AVAP1) (AVA-P1) identical to SP|P59227 Vacuolar ATP
synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14)
(V-ATPase 16 kDa proteolipid subunit 1/3/5) {Arabidopsis
thaliana}; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 164
Score = 101 bits (243), Expect = 3e-22
Identities = 47/76 (61%), Positives = 62/76 (81%), Gaps = 1/76 (1%)
Frame = +1
Query: 256 VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPA-NYPLYKGFIHLGAGLAVGFS 432
VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+ + A +Y L+ G+ HL +GLA G +
Sbjct: 45 VMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLA 104
Query: 433 GLAAGFAIGIVGDAGV 480
GL+AG AIGIVGDAGV
Sbjct: 105 GLSAGMAIGIVGDAGV 120
Score = 57.2 bits (132), Expect = 9e-09
Identities = 23/33 (69%), Positives = 30/33 (90%)
Frame = +2
Query: 155 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 253
PFFG +GAA+A++FS +GAAYGTAKSG G+A+M
Sbjct: 11 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASM 43
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 495 QQPKVFVGMILILIF 539
QQPK+FVGMILILIF
Sbjct: 125 QQPKLFVGMILILIF 139
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/30 (30%), Positives = 22/30 (73%)
Frame = +1
Query: 262 RPELIMKSIIPVVMAGIIAIYGLVVAVLIA 351
+P+L + I+ ++ A +A+YGL+V ++++
Sbjct: 126 QPKLFVGMILILIFAEALALYGLIVGIILS 155
>At2g16510.1 68415.m01893 vacuolar ATP synthase 16 kDa proteolipid
subunit 5 / V-ATPase 16 kDa proteolipid subunit 5
(AVAP5) identical to SP|P59227 Vacuolar ATP synthase 16
kDa proteolipid subunit 1/3/5 (EC 3.6.3.14) (V-ATPase 16
kDa proteolipid subunit 1/3/5) {Arabidopsis thaliana}
GI:926929; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 164
Score = 101 bits (243), Expect = 3e-22
Identities = 47/76 (61%), Positives = 62/76 (81%), Gaps = 1/76 (1%)
Frame = +1
Query: 256 VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPA-NYPLYKGFIHLGAGLAVGFS 432
VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+ + A +Y L+ G+ HL +GLA G +
Sbjct: 45 VMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLA 104
Query: 433 GLAAGFAIGIVGDAGV 480
GL+AG AIGIVGDAGV
Sbjct: 105 GLSAGMAIGIVGDAGV 120
Score = 57.2 bits (132), Expect = 9e-09
Identities = 23/33 (69%), Positives = 30/33 (90%)
Frame = +2
Query: 155 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 253
PFFG +GAA+A++FS +GAAYGTAKSG G+A+M
Sbjct: 11 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASM 43
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 495 QQPKVFVGMILILIF 539
QQPK+FVGMILILIF
Sbjct: 125 QQPKLFVGMILILIF 139
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/30 (30%), Positives = 22/30 (73%)
Frame = +1
Query: 262 RPELIMKSIIPVVMAGIIAIYGLVVAVLIA 351
+P+L + I+ ++ A +A+YGL+V ++++
Sbjct: 126 QPKLFVGMILILIFAEALALYGLIVGIILS 155
>At1g75630.1 68414.m08787 vacuolar ATP synthase 16 kDa proteolipid
subunit 4 / V-ATPase 16 kDa proteolipid subunit 4
(AVAP4) (AVA-P4) identical to SP|P59229 Vacuolar ATP
synthase 16 kDa proteolipid subunit 4 (EC 3.6.3.14)
(V-ATPase 16 kDa proteolipid subunit 4) {Arabidopsis
thaliana}; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 166
Score = 101 bits (243), Expect = 3e-22
Identities = 47/76 (61%), Positives = 62/76 (81%), Gaps = 1/76 (1%)
Frame = +1
Query: 256 VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPA-NYPLYKGFIHLGAGLAVGFS 432
VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+ + A +Y L+ G+ HL +GLA G +
Sbjct: 47 VMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLA 106
Query: 433 GLAAGFAIGIVGDAGV 480
GL+AG AIGIVGDAGV
Sbjct: 107 GLSAGMAIGIVGDAGV 122
Score = 57.2 bits (132), Expect = 9e-09
Identities = 23/33 (69%), Positives = 30/33 (90%)
Frame = +2
Query: 155 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 253
PFFG +GAA+A++FS +GAAYGTAKSG G+A+M
Sbjct: 13 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASM 45
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 495 QQPKVFVGMILILIF 539
QQPK+FVGMILILIF
Sbjct: 127 QQPKLFVGMILILIF 141
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/30 (30%), Positives = 22/30 (73%)
Frame = +1
Query: 262 RPELIMKSIIPVVMAGIIAIYGLVVAVLIA 351
+P+L + I+ ++ A +A+YGL+V ++++
Sbjct: 128 QPKLFVGMILILIFAEALALYGLIVGIILS 157
>At1g19910.1 68414.m02496 vacuolar ATP synthase 16 kDa proteolipid
subunit 2 / V-ATPase 16 kDa proteolipid subunit 2
(AVAP2) (AVA-P2) identical to SP|Q39039 Vacuolar ATP
synthase 16 kDa proteolipid subunit 2 (EC 3.6.3.14)
(V-ATPase 16 kDa proteolipid subunit 2 {Arabidopsis
thaliana}, nearly identical to vacuolar H+-ATPase
proteolipid (16 kDa) subunit GI:755147 from [Gossypium
hirsutum]
Length = 165
Score = 101 bits (243), Expect = 3e-22
Identities = 47/76 (61%), Positives = 62/76 (81%), Gaps = 1/76 (1%)
Frame = +1
Query: 256 VMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPA-NYPLYKGFIHLGAGLAVGFS 432
VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+ + A +Y L+ G+ HL +GLA G +
Sbjct: 46 VMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLA 105
Query: 433 GLAAGFAIGIVGDAGV 480
GL+AG AIGIVGDAGV
Sbjct: 106 GLSAGMAIGIVGDAGV 121
Score = 57.2 bits (132), Expect = 9e-09
Identities = 23/33 (69%), Positives = 30/33 (90%)
Frame = +2
Query: 155 PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 253
PFFG +GAA+A++FS +GAAYGTAKSG G+A+M
Sbjct: 12 PFFGFLGAAAALVFSCMGAAYGTAKSGVGVASM 44
Score = 32.3 bits (70), Expect = 0.28
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +3
Query: 495 QQPKVFVGMILILIF 539
QQPK+FVGMILILIF
Sbjct: 126 QQPKLFVGMILILIF 140
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/30 (30%), Positives = 22/30 (73%)
Frame = +1
Query: 262 RPELIMKSIIPVVMAGIIAIYGLVVAVLIA 351
+P+L + I+ ++ A +A+YGL+V ++++
Sbjct: 127 QPKLFVGMILILIFAEALALYGLIVGIILS 156
>At4g32530.1 68417.m04631 vacuolar ATP synthase, putative /
V-ATPase, putative SP|P23968 Vacuolar ATP synthase 22
kDa proteolipid subunit (EC 3.6.3.14) {Saccharomyces
cerevisiae}; contains Pfam profile PF00137: ATP synthase
subunit C
Length = 180
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Frame = +1
Query: 265 PELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYK------GFIHLGAGLAVG 426
P + K++I V+ +AIYG++VA+++ L+ + +Y G+ +G+ VG
Sbjct: 60 PRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPSSKMYDAESLRAGYAIFASGIIVG 119
Query: 427 FSGLAAGFAIGIVGDA 474
F+ L G +GI+G +
Sbjct: 120 FANLVCGLCVGIIGSS 135
>At2g25610.1 68415.m03068 H+-transporting two-sector ATPase, C
subunit family protein similar to SP|P23968 Vacuolar ATP
synthase 22 kDa proteolipid subunit (EC 3.6.3.14)
{Saccharomyces cerevisiae}; contains Pfam profile
PF00137: ATP synthase subunit C
Length = 178
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 6/76 (7%)
Frame = +1
Query: 265 PELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYK------GFIHLGAGLAVG 426
P + K++I V+ +AIYG++VA+++ L+ + +Y G+ +G+ VG
Sbjct: 58 PRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPSSKMYDAESLRAGYAIFASGIIVG 117
Query: 427 FSGLAAGFAIGIVGDA 474
F+ L G +GI+G +
Sbjct: 118 FANLVCGLCVGIIGSS 133
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 32.3 bits (70), Expect = 0.28
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 557 TPNTSAKNKNKNHSXEYLRLLKQYHGTPAS-PTMPMAKPAARPENPTAKP 411
TP+T+ K+ + S L TP S PT+P +K +R PT +P
Sbjct: 271 TPSTTTKSAGPSRSTTPLSRSTARSSTPTSRPTLPPSKTISRSSTPTRRP 320
>At1g80480.1 68414.m09427 PRLI-interacting factor L, putative
similar to PRLI-interacting factor L [Arabidopsis
thaliana] GI:11139268; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 444
Score = 32.3 bits (70), Expect = 0.28
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 402 VDEPFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDRLHDQLRPHH 256
VD +V G+ G+ LE + + D D ++ HD +D HD HH
Sbjct: 283 VDLDYVLGIGGFDLERIESSVNEDDKGDHHDHDHDHHHDHNHDHDHHHH 331
>At5g56330.1 68418.m07031 carbonic anhydrase family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains Pfam profile PF00194: Eukaryotic-type carbonic
anhydrase
Length = 350
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/61 (37%), Positives = 26/61 (42%)
Frame = -3
Query: 479 TPASPTMPMAKPAARPENPTAKPAPKWMNPL*RG*LAGSWRAPAIRTATTRP*MAIIPAM 300
TPA PT P KP P P KPAP P + A + P + A T P PA
Sbjct: 45 TPA-PTPPKPKPKPAPTPPKPKPAPAPTPPKPKPAPAPTPPKPKPKPAPTPPNPKPTPAP 103
Query: 299 T 297
T
Sbjct: 104 T 104
>At4g16980.1 68417.m02560 arabinogalactan-protein family similar to
arabinogalactan protein [Arabidopsis thaliana]
gi|10880495|gb|AAG24277; contains proline-rich extensin
domains, INTERPRO:IPR002965
Length = 164
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 473 ASPTMPMAKPAARPENPTAKPAP 405
A P MPMA P P P+ P+P
Sbjct: 82 APPPMPMASPPMMPMTPSTSPSP 104
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -3
Query: 476 PASPTMPMAKPAARPENPTAKPAPKWMNP 390
P++P P P + P+ PT KP P P
Sbjct: 125 PSTPKPPTKPPPSTPKPPTTKPPPSTPKP 153
>At5g19970.1 68418.m02377 expressed protein ; expression supported
by MPSS
Length = 363
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 159 SLELWGRRLLSSSAPWELPMELPSQELVLPPCG 257
SLE+W + S+ WEL PS+ + PCG
Sbjct: 265 SLEVW--EISSNGEKWELVSRAPSEVISKKPCG 295
>At4g33970.1 68417.m04820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 699
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 479 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 387
TP PT P+ KP+ P P KP+P P+
Sbjct: 440 TPV-PTTPVQKPSPVPTTPVQKPSPVPTTPV 469
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 479 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 387
TP PT P+ KP P P KP+P P+
Sbjct: 429 TPV-PTTPVHKPTPVPTTPVQKPSPVPTTPV 458
>At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]; non-consensus splice donor GC at exon 4;
non-consensus splice donor AA at exon 7
Length = 606
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Frame = +3
Query: 177 RRLLSSSAPWELPMELPSQELVLPPCGDEA*ADHEVDHSCRHGGY------YCHLRSGRG 338
R LLS +P +P+ PS ++P + SC GG Y H+RS
Sbjct: 27 RFLLSVDSPPHIPLLRPSSNTLIPSSS----FSRRIWDSCSGGGGGGGGDDYDHIRSDVN 82
Query: 339 CPDC 350
CP C
Sbjct: 83 CPRC 86
>At3g04570.1 68416.m00485 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 315
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = -2
Query: 453 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDRLHD 274
G+ E+ S+Q+ +P + + ++ N H Q VD NN DDR++ D
Sbjct: 8 GQVNLSGLETTPPGSSQLKKPDLHISMNMAMDSGHNNHHHHQEVD-NNNNDDDRDNLSGD 66
Query: 273 QLRP 262
P
Sbjct: 67 DHEP 70
>At2g29050.1 68415.m03531 rhomboid family protein contains PFAM
domain PF01694, Rhomboid family
Length = 389
Score = 27.5 bits (58), Expect = 8.0
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +1
Query: 184 CYHLQRLGSCLWNCQVRNWYC 246
C++L + + LW+C+ +N YC
Sbjct: 328 CHYLSCIPTSLWSCKSQNVYC 348
>At2g19450.1 68415.m02272 diacylglycerol O-acyltransferase / acyl
CoA:diacylglycerol acyltransferase (DGAT) identical to
gi:5050913, gi:6625553
Length = 520
Score = 27.5 bits (58), Expect = 8.0
Identities = 22/65 (33%), Positives = 30/65 (46%)
Frame = +1
Query: 214 LWNCQVRNWYCRHVVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKG 393
+WN V W RH+ ++S IP +A IIA LV AV + P L+K
Sbjct: 408 MWNMPVHKWMVRHIYFP---CLRSKIPKTLAIIIAF--LVSAVFHELCIAVPCR--LFKL 460
Query: 394 FIHLG 408
+ LG
Sbjct: 461 WAFLG 465
>At2g17820.1 68415.m02064 histidine kinase 1 99% identical to
GP:4586626
Length = 1207
Score = 27.5 bits (58), Expect = 8.0
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -2
Query: 474 CISHDAYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGT-SNQDSHDQTVDGNNTRHD 298
C S D+ ET + + S + + P +K +L++ T SN DS ++ N +
Sbjct: 966 CSSDDS-SETSGEKQVDKSVKPSTLHSPVLKN---YLIDATTSNDDSTSASMTQKNPEEE 1021
Query: 297 DRNDRLH 277
D DRL+
Sbjct: 1022 DWKDRLY 1028
>At1g15730.1 68414.m01887 PRLI-interacting factor L, putative strong
similarity to PRLI-interacting factor L GI:11139268 from
[Arabidopsis thaliana]; contains Pfam profile PF02492:
Cobalamin synthesis protein/P47K
Length = 448
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -2
Query: 360 EGTSNQDSHDQTVDGNNTRHDDRNDRLHDQLRPHHH 253
E +++ HD G++ HD N+ H+ HHH
Sbjct: 309 EEKEDREGHDDHHHGHDC-HDHHNEHEHEHEHEHHH 343
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,921,876
Number of Sequences: 28952
Number of extensions: 321592
Number of successful extensions: 1130
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -