Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060206.seq
(677 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 108 5e-24
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 100 2e-21
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 99 3e-21
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 98 5e-21
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 54 8e-08
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 33 0.28
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 31 1.1
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 31 1.1
02_05_0250 + 27153048-27154453,27154546-27154885 31 1.1
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347... 30 1.5
08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695 29 3.4
08_02_0610 + 19307537-19308011,19308187-19310846 29 3.4
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 29 3.4
05_01_0297 - 2314687-2316021 29 4.5
03_02_0360 - 7796799-7796816,7797477-7797587,7797760-7798068 29 4.5
08_02_0733 + 20546072-20546325,20546924-20547017,20547441-205476... 28 7.9
02_05_0402 + 28687597-28687671,28688123-28688235,28688927-286894... 28 7.9
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 108 bits (259), Expect = 5e-24
Identities = 47/77 (61%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +3
Query: 54 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVH 230
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE+STSKTGKHGHAK H
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 231 LVGIDIFNVKSMKISVP 281
VGIDIFN K ++ VP
Sbjct: 61 FVGIDIFNGKKLEDIVP 77
Score = 97.1 bits (231), Expect = 1e-20
Identities = 43/88 (48%), Positives = 66/88 (75%), Gaps = 2/88 (2%)
Frame = +2
Query: 257 KKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLR 433
KK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G+ ++DL++P D L Q++
Sbjct: 70 KKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDDTLTNQIK 129
Query: 434 TDF-DSGKELLCTVLKSCGEECVIAVKQ 514
F + GK+++ TV+ + GEE + AVK+
Sbjct: 130 NGFGEEGKDMILTVMSAMGEEQICAVKE 157
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 99.5 bits (237), Expect = 2e-21
Identities = 43/86 (50%), Positives = 66/86 (76%), Gaps = 1/86 (1%)
Frame = +2
Query: 257 KKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLR 433
KK EDI PS+HN DVPHV R +YQL DIS+DG+++L+ +NG+ ++DL++P D +L +Q++
Sbjct: 102 KKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLSQIK 161
Query: 434 TDFDSGKELLCTVLKSCGEECVIAVK 511
F GK+L+ TV+ + GEE + A+K
Sbjct: 162 DGFGEGKDLVVTVMSAMGEEQICALK 187
Score = 55.6 bits (128), Expect(2) = 1e-18
Identities = 24/36 (66%), Positives = 28/36 (77%)
Frame = +3
Query: 174 KIVEMSTSKTGKHGHAKVHLVGIDIFNVKSMKISVP 281
K+VE+STSKTGKHGHAK H V IDIF K ++ VP
Sbjct: 74 KVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVP 109
Score = 55.2 bits (127), Expect(2) = 1e-18
Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +3
Query: 54 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK 176
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCK 42
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 99.1 bits (236), Expect = 3e-21
Identities = 46/81 (56%), Positives = 59/81 (72%), Gaps = 5/81 (6%)
Frame = +3
Query: 54 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK----IVEMSTSKTGKHGH 218
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK +VE+STSKTGKHGH
Sbjct: 14 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKGFGKVVEVSTSKTGKHGH 73
Query: 219 AKVHLVGIDIFNVKSMKISVP 281
AK H V IDIFN K ++ VP
Sbjct: 74 AKCHFVAIDIFNGKKLEDIVP 94
Score = 98.3 bits (234), Expect = 5e-21
Identities = 43/86 (50%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Frame = +2
Query: 257 KKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLR 433
KK EDI PS+HN DVPHV R +YQL DIS+DG+++L+ ++G+ ++DL++P D L Q++
Sbjct: 87 KKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPTDDSLLGQIK 146
Query: 434 TDFDSGKELLCTVLKSCGEECVIAVK 511
T F GK+L+ TV+ + GEE + A+K
Sbjct: 147 TGFGEGKDLVVTVMSAMGEEQICALK 172
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 98.3 bits (234), Expect = 5e-21
Identities = 44/86 (51%), Positives = 64/86 (74%), Gaps = 1/86 (1%)
Frame = +2
Query: 257 KKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLR 433
KK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G ++DL++P D L TQ++
Sbjct: 1405 KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLRLPSDEALLTQIK 1464
Query: 434 TDFDSGKELLCTVLKSCGEECVIAVK 511
F GK+L+ TV+ + GEE + A+K
Sbjct: 1465 DGFAEGKDLIVTVMSAMGEEQICALK 1490
Score = 90.2 bits (214), Expect = 1e-18
Identities = 46/90 (51%), Positives = 58/90 (64%), Gaps = 14/90 (15%)
Frame = +3
Query: 54 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK-------------IVEMS 191
M D E+ HFE+ D+GAS T+P Q +RKNG +++K RPCK +VE+S
Sbjct: 1323 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKWSGNHASLLVDTKVVEVS 1382
Query: 192 TSKTGKHGHAKVHLVGIDIFNVKSMKISVP 281
TSKTGKHGHAK H V IDIFN K ++ VP
Sbjct: 1383 TSKTGKHGHAKCHFVAIDIFNGKKLEDIVP 1412
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 54.4 bits (125), Expect = 8e-08
Identities = 25/63 (39%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Frame = +2
Query: 305 HVKREDYQLTDISDDG-YLTLMADNGDLREDLKIPDGD-LGTQLRTDFDSGKELLCTVLK 478
H+ R +YQL DIS+DG +++L+ ++G+ ++DL +P D L Q++T F GK+++ TV+
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVVVTVMS 105
Query: 479 SCG 487
+ G
Sbjct: 106 AMG 108
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 32.7 bits (71), Expect = 0.28
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1
Query: 94 PGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKPE 207
P PQPP PC PC K C + C PKP+
Sbjct: 81 PLPQPPPPCKPPPCEKPPEDC-KPKPCHCCSCEKPKPK 117
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +2
Query: 296 DVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD 415
D P+ RE +++ ++ D Y+T D+G L ED+K+ G+
Sbjct: 38 DFPNFIREGFEVKVVTSDNYIT--RDSGLLYEDIKVGTGN 75
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 55 WVTSKTHTSRPETPGPQPPSPCNV 126
W+T T P+ P P PP PC+V
Sbjct: 52 WLTWPPPTPLPDAPPPPPPHPCDV 75
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/57 (36%), Positives = 25/57 (43%)
Frame = +2
Query: 368 ADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIAVKQTQLSTNKP 538
A GD DL IPD + TQ+ T+ S C V S G C AV + T P
Sbjct: 248 ASTGDRSVDLPIPDNETNTQI-TEMRSNGAEKCDVQLSGGTLCSEAVPASNSETVCP 303
>01_06_1303 -
36132588-36132710,36133879-36134103,36134318-36134713,
36135352-36135547,36135591-36135740,36135818-36135924,
36135987-36136094,36136354-36136435,36136436-36136536,
36136778-36136996,36137455-36137583,36137665-36137742,
36137816-36137929,36138071-36138230,36139224-36139441
Length = 801
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +3
Query: 15 HIIPDRC*IQNTTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMS 191
H+ +Q ++ D E H T +ATFPM L N + +GR CK V +S
Sbjct: 423 HVADPTSLVQPRSIIDREAMHRGTSIFLPTATFPMFPERLAMNAMSLQQGRGCKSVTVS 481
>08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695
Length = 664
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 404 PDGDLGTQLRTDFDSGKELLCTVLKSCGE 490
PDGDL ++R +SGKEL L G+
Sbjct: 206 PDGDLKDKMRDAMESGKELTSNALALIGK 234
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 80 EVCVFDVTHCCVLNLTTVRNDM 15
+VC FD+ CC L T+ NDM
Sbjct: 835 DVCHFDLRTCCALPPATLENDM 856
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -1
Query: 443 RSQYATVCRGHHPEF*GPHAGHRCQPSGSGSHHPRYQSVGSLRASRGVRPCC 288
+++YA+ HHPE H + S H R+ S G + ASR + C
Sbjct: 150 KNEYASKAEVHHPEILVDHDVYLPPSPSSHDSHERFCSGGVVLASRDGKIVC 201
>05_01_0297 - 2314687-2316021
Length = 444
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +2
Query: 329 LTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCG 487
+ D + +G L + AD D+R + DGD G +LR F S +LL V S G
Sbjct: 91 VVDCTGEGVLFVEAD-ADVRLEELEEDGDGGGELRPPFPSMDQLLLDVEGSGG 142
>03_02_0360 - 7796799-7796816,7797477-7797587,7797760-7798068
Length = 145
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +1
Query: 70 THTSRPETPGPQPPSPCNVRP-CVKTVSLC*RVVHARLLKCPHP 198
T PE P PP C + P C C ++ +LL+ HP
Sbjct: 3 TAKQAPENESPPPPPHCWIYPECTLVTRSCCLLLRLKLLRHGHP 46
>08_02_0733 +
20546072-20546325,20546924-20547017,20547441-20547624,
20547722-20547831,20548328-20548423,20548525-20548679,
20548743-20548986,20549159-20549314,20549600-20549829,
20552213-20552316,20552420-20552505,20552776-20553066,
20553383-20553475,20553640-20553735,20553838-20553939,
20554196-20554266,20554784-20555035,20555786-20556529,
20557038-20557119,20557192-20557347,20557446-20557655,
20558282-20558665
Length = 1397
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 87 GDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 245
G SG+ + + SA+ ++ F + + K+VEM ++ K + KVH G D
Sbjct: 543 GTSGSKCS--LWLSAIVRHMFTLYDFKLAKLVEMESALEDKSKNVKVHAEGYD 593
>02_05_0402 +
28687597-28687671,28688123-28688235,28688927-28689432,
28689544-28689717,28689953-28690082,28692241-28692772,
28693578-28693823,28694648-28695061
Length = 729
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = +2
Query: 269 DICPSTHNMD---VPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD 439
D CP T D V++ + TD +M G + GDLG+ RTD
Sbjct: 233 DQCPGTSATDSTGATCVQQAEKVSTDSDQVAKAAMMTAEGAMNFMRSTISGDLGSFPRTD 292
Query: 440 FDSGKE 457
SGKE
Sbjct: 293 AASGKE 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,545,810
Number of Sequences: 37544
Number of extensions: 415016
Number of successful extensions: 1580
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1563
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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