Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060206.seq
(677 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15) 99 4e-21
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75) 31 0.65
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.86
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19) 30 1.5
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35) 24 2.5
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94) 29 3.5
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13) 28 6.0
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 28 8.0
SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
SB_23891| Best HMM Match : P60 (HMM E-Value=2.2) 28 8.0
>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
Length = 710
Score = 98.7 bits (235), Expect = 4e-21
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +3
Query: 48 TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 227
T ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKTGKHGHAKV
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644
Score = 70.5 bits (165), Expect = 1e-12
Identities = 29/62 (46%), Positives = 44/62 (70%)
Frame = +2
Query: 326 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIA 505
++T+I +DGYL LM DNGD R D+K+ D D+ ++R F++ + + TVLK+ GEE V+
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVG 702
Query: 506 VK 511
VK
Sbjct: 703 VK 704
>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
Length = 568
Score = 31.5 bits (68), Expect = 0.65
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 4 TSGHISFLTVVKFKTQQWVTSKTHTSRPETPGPQPPSPCNVRPC 135
T H L K KT + T+K +T++P T P+ P +PC
Sbjct: 89 TKPHTIKLYTTKPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132
Score = 31.5 bits (68), Expect = 0.65
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 4 TSGHISFLTVVKFKTQQWVTSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVH-ARL 180
T H + K T + T+K HT++P T P P N+ P + + +L ++H
Sbjct: 149 TKPHTTKPRTTKPPTTKPHTTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLHFLYF 208
Query: 181 LKCPH 195
+ PH
Sbjct: 209 YQAPH 213
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 31.1 bits (67), Expect = 0.86
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 525 ESC--VCLTAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPS 406
+SC +C T+ S P + H+N+ P S NC P PS
Sbjct: 1285 QSCPKICFTSCKPSCPVHCCSEHSNACPQECSTDNCKPSCPS 1326
>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +1
Query: 49 QQWVTSKTHTSRPETPGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKP 204
+Q V S P P P PP+PC + PC +T +VVH+ L P P
Sbjct: 126 EQHVVSHVMHPAPPPPPPPPPAPC-MPPCHQT-----QVVHSVQLHASPPGP 171
>SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)
Length = 975
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -1
Query: 446 CRS-QYATVCRGHHPEF*GPHAGHRCQPSGSGSHHPRYQSV-GSLRASRGVRPC 291
CRS Q TV HH HRC+ SG+H R+ ++ L RPC
Sbjct: 241 CRSLQVQTVINAHHTVRNVCDICHRCRKGCSGNHDNRFGAIQARLLGGLAPRPC 294
>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
Length = 458
Score = 24.2 bits (50), Expect(2) = 2.5
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 112 SPCNVRPCVKTVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLISSM*KV*RY 273
+PC ++ C + +S+ V ++K P P TL ++G + K+ +Y
Sbjct: 398 NPCRIQYCTQEISMTPIHVLLLIVKAPILDPSLVVTLCSRFIGHQARKLKIVKY 451
Score = 23.8 bits (49), Expect(2) = 2.5
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +1
Query: 94 PGPQPPSPCNVRP 132
PGPQ P P N+ P
Sbjct: 362 PGPQDPGPGNILP 374
>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
Length = 1058
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 28 TVVKFKTQQWVTSKTHTSRPETPGPQPPSPCNVRP 132
+VV + VT K T +P TP P P P RP
Sbjct: 758 SVVAMPAARPVTPKPVTPKPVTPKPVTPKPVTTRP 792
>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
Length = 492
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -3
Query: 486 PQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIRVR 355
P+ S V + +LP+ V C+P SPS I RS P VR
Sbjct: 253 PRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISNVR 295
>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 138 KNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVG 239
+ G +M +G+PCKI + K G HG +H+ G
Sbjct: 17 RRGVMMAEGKPCKITGTIEGLKAGNHGF-HIHVYG 50
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 27.9 bits (59), Expect = 8.0
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 64 SKTHTSRPETPGPQPPSPCNV 126
++T T++PET P+PP+P +
Sbjct: 165 TETTTTKPETKPPKPPAPSTI 185
>SB_6613| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 523
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +2
Query: 293 MDVPHVKREDYQLTDISDDGYLT----LMADNGDLREDLKIPDGDLGTQLRTDFDSGKEL 460
+D+P+ K + + L ++DD L+ + D L E L PD + R D G E
Sbjct: 37 LDIPYEKYDKFDLESLTDDECLSEFRFIKNDLYRLNEALNFPD-QITCPNRLTVD-GMEA 94
Query: 461 LCTVLKSCGEEC 496
LC L+ C
Sbjct: 95 LCMTLRRFAYPC 106
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/82 (23%), Positives = 33/82 (40%)
Frame = +2
Query: 278 PSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKE 457
P + + V + +++ D + ADN + RE+ + +L ++ T G
Sbjct: 284 PESDGIRVDETENGEHEAVDELPEDKPDTEADNYEQREETPTKEDELKSECTTSDSEGTP 343
Query: 458 LLCTVLKSCGEECVIAVKQTQL 523
T KS GEE V + L
Sbjct: 344 SAATYGKSDGEENVAQESEESL 365
>SB_23891| Best HMM Match : P60 (HMM E-Value=2.2)
Length = 1167
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -2
Query: 271 IFILFTLKISIP-TK*TLAWPCFPVLDVDISTILHGRPFSITKPFLR 134
+F LF L+ S+ T + W CFP+ D + + I+ G+ PFLR
Sbjct: 666 VFELFVLRGSVTATDRVVGWGCFPICDGEFN-IVEGK---YKAPFLR 708
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,649,333
Number of Sequences: 59808
Number of extensions: 480262
Number of successful extensions: 1458
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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