Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060206.seq
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...   120   1e-27
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...   110   1e-24
CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical ...    31   0.76 
AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear recep...    30   1.3  
AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear recep...    30   1.3  
AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormo...    30   1.3  
AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormo...    30   1.3  
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    29   2.3  
Z98860-1|CAB11544.1|  677|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AC006834-4|AAF40012.1|  392|Caenorhabditis elegans Hypothetical ...    28   7.0  
Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score =  120 bits (289), Expect = 1e-27
 Identities = 54/72 (75%), Positives = 60/72 (83%)
 Frame = +3

Query: 66  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 245
           +D HF TGDSGA+ATFP QCSALRKN  VM+KGRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7   DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66

Query: 246 IFNVKSMKISVP 281
           IF  K ++   P
Sbjct: 67  IFTSKKLEDICP 78



 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 42/87 (48%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
 Frame = +2

Query: 257 KKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGTQLR 433
           KK EDICPSTHNMDVP VKR +Y L  I DDGY +LM  ++ + ++DLK+PD +LG Q+R
Sbjct: 71  KKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELGQQIR 129

Query: 434 TDFDSGK-ELLCTVLKSCGEECVIAVK 511
             ++  +  +L  V+ + GEE ++  K
Sbjct: 130 DAYEKDEGSVLVQVVSAIGEEAILGWK 156


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score =  110 bits (264), Expect = 1e-24
 Identities = 48/72 (66%), Positives = 59/72 (81%)
 Frame = +3

Query: 66  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 245
           ++  F++ +SGA+ATFP QCSALRKN  VM++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41  DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100

Query: 246 IFNVKSMKISVP 281
           IF  K ++   P
Sbjct: 101 IFTTKKLEDICP 112



 Score = 86.6 bits (205), Expect = 1e-17
 Identities = 42/87 (48%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
 Frame = +2

Query: 257 KKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGTQLR 433
           KK EDICPSTHNMDVP VKR +Y L  I +DG+ +LM  ++ +L++DLK+P+GDLG  +R
Sbjct: 105 KKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLGNTIR 163

Query: 434 TDFDSGK-ELLCTVLKSCGEECVIAVK 511
              +  +  +L  V+ +CGEE ++  K
Sbjct: 164 EALEKDEGSVLVQVVAACGEEAILGYK 190


>CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical
           protein K09E10.2 protein.
          Length = 695

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +2

Query: 290 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FDSGKEL 460
           N  +P +K++ Y L     ++ GY+  +   GDL+   KI D      LR D ++ G+  
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLR 629

Query: 461 LCTVLKSCGEEC 496
              ++K CG++C
Sbjct: 630 HAALVKECGDKC 641


>AY204179-1|AAO39183.1|  486|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 486

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +1

Query: 31  VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 147
           V+K  T + ++S T      T+   TPGP P +PC+  P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF332209-1|AAK17980.1|  350|Caenorhabditis elegans nuclear receptor
           NHR-80 protein.
          Length = 350

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +1

Query: 31  VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 147
           V+K  T + ++S T      T+   TPGP P +PC+  P V T+
Sbjct: 13  VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 56


>AF078783-3|AAN63404.1|  504|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform b protein.
          Length = 504

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +1

Query: 31  VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 147
           V+K  T + ++S T      T+   TPGP P +PC+  P V T+
Sbjct: 167 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 210


>AF078783-2|AAK82901.1|  486|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 80, isoform a protein.
          Length = 486

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +1

Query: 31  VVKFKTQQWVTSKTH-----TSRPETPGPQPPSPCNVRPCVKTV 147
           V+K  T + ++S T      T+   TPGP P +PC+  P V T+
Sbjct: 149 VIKTPTPRKISSSTSFSASTTTNYSTPGPSPMAPCSAGPDVLTL 192


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 61  TSKTHTSRPETPGPQPPSPCNVRP 132
           T K  T R E+P P PP P   RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381


>Z98860-1|CAB11544.1|  677|Caenorhabditis elegans Hypothetical
           protein Y26G10.1 protein.
          Length = 677

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +3

Query: 147 FVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNVKSMKISVPPHTTWTY 302
           +++   R   I+   T+++GK G ++  LV I I+ + S+         W+Y
Sbjct: 241 YILKMERKTSIISPQTAESGKQGVSEQLLVTIVIYGITSLTFEFLNTRDWSY 292


>Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A8.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 350 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 466
           GYL      GD ++++K+ +G    Q+ +D D  K   C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 148 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 56
           +P  +R+++C G + E  E  ++KC  +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375


>AC006834-4|AAF40012.1|  392|Caenorhabditis elegans Hypothetical
           protein ZK973.8 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 531 FVESC-VCLTAMTHSSPQDFSTVHNNSL 451
           FV SC V +T + H  P  F+TVH  SL
Sbjct: 16  FVHSCQVPITEVNHMMPIHFATVHEYSL 43


>Z74031-2|CAA98454.2|  568|Caenorhabditis elegans Hypothetical
           protein F32D8.2 protein.
          Length = 568

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
 Frame = +2

Query: 266 EDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 400
           ED+   T +    H+ R + ++       D+S DGYLTL + N  DL  D++
Sbjct: 81  EDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,739,106
Number of Sequences: 27780
Number of extensions: 347851
Number of successful extensions: 1126
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)