Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060205.seq
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   1.8  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.8  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    26   5.5  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    25   7.2  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   7.2  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.5  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   9.5  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    25   9.5  

>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +2

Query: 317 LITKSGVIQLIMKSKLPYAIELQEWLL 397
           L+ K GV+ L+ K KLP+++  ++ ++
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMII 568


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 202 STSTASTNRRLSMPTKSRPCSR*RGKAGRPAVFAPTHSAHYQI 330
           S+S+ S++R  S  T  R  S  +  + RP VF  T  +HY I
Sbjct: 163 SSSSKSSSRSSSRTTSHRTTSH-KSSSYRPTVFPYTTISHYNI 204


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +2

Query: 479 IDDLTQKLTVPTQIWRKPTDR 541
           +D+L ++ T+PT++  + TDR
Sbjct: 31  LDELEEQFTIPTELLHRVTDR 51


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -2

Query: 343 LNHARFGNEHCVWVQIQRVALLCHAIWSMVWIWSACSNVDLYLPSTW 203
           L+ + FG    +W  + R  L C  +W  V  W     V L + S W
Sbjct: 123 LSRSSFGTWGSLWPILNRSVLAC--VWYGVQAWIGGECVVLMIRSIW 167


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 120 GDEQPVRFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHAD 245
           GDE     V+ D  S    V+  +   ++  GKY+ TF H D
Sbjct: 48  GDEIECIVVSMDDKSKKARVSLRQEDILNALGKYEETFRHVD 89


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 201 HVLPVHNLHILNCW 160
           HVLP+  L +LNC+
Sbjct: 405 HVLPIRQLFLLNCY 418


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 243 RHAQTSICTCRRRGHVLPVHNLHILN 166
           R A T +   R    +LPVH LH+ +
Sbjct: 776 RQAMTRLKGLRETNSILPVHQLHMFH 801


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 464 DVIAKIDDLTQKLTVPTQIW 523
           + +A++DD  +K + P+QIW
Sbjct: 342 ETVARMDDSNKKESQPSQIW 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,663
Number of Sequences: 5004
Number of extensions: 60516
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)