Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060205.seq
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0110 - 5371536-5372882 31 0.80
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445... 29 2.4
11_03_0026 - 9057965-9058234,9059410-9059522,9059612-9059802,906... 29 3.2
10_08_0359 - 17167829-17169595,17169976-17169996 29 3.2
03_02_0982 + 12925861-12926211,12926309-12926378,12927190-129272... 28 5.6
01_06_1510 - 37859664-37861319 28 7.5
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 27 9.9
08_02_0315 + 15680170-15680304,15681166-15681318 27 9.9
04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410 27 9.9
>10_02_0110 - 5371536-5372882
Length = 448
Score = 31.1 bits (67), Expect = 0.80
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Frame = -3
Query: 339 ITPDLVMSTVCGCKY----SG-SPCFATLSGAWSGFGRHAQTSICTCRRRGHVLPVHNLH 175
I+PD +S + +Y +G S C+ G+ G R Q S+CT R R H L VH
Sbjct: 320 ISPDGKLSFIVTSRYFDGSAGVSSCYHLAFGSNGGCTRE-QVSVCTWRVRLHELRVHRSD 378
Query: 174 ILNC-WRC 154
+N W C
Sbjct: 379 AMNLRWFC 386
>02_01_0599 -
4455151-4455915,4455999-4456098,4456176-4456222,
4456566-4456612,4457299-4457461,4458013-4458042
Length = 383
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +2
Query: 335 VIQLIMKSKLPYAIELQEWLL--EEVIPQV--LCTGKYAPAVEMDTNDVIAKIDDLTQKL 502
V+ ++ + + +EL+E E ++ Q+ ++AP+VE +V A I+ +T+K+
Sbjct: 268 VMAILKNRREKFTLELKELQRKRENLLAQMGDPSANRHAPSVEHSLAEVAAHIEAVTEKI 327
Query: 503 TVPTQIWRK 529
+ + W+K
Sbjct: 328 IMEEEKWKK 336
>11_03_0026 -
9057965-9058234,9059410-9059522,9059612-9059802,
9060606-9060720,9061781-9061907,9062915-9062990,
9064247-9064365,9065430-9065593,9065666-9065779,
9065966-9066065,9066276-9066340,9068175-9068253,
9069513-9069659,9069904-9070161,9070657-9070852,
9071179-9071402,9072531-9072554
Length = 793
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 337 HARFGNEHCVWVQIQRVALLCHA 269
H FG++H + VQ+Q A++CHA
Sbjct: 203 HIVFGSQHNLPVQLQAKAVICHA 225
>10_08_0359 - 17167829-17169595,17169976-17169996
Length = 595
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = -3
Query: 564 HFVGKQNERSVGFRQICVGTVNFCVRSSI---LAITSFVSISTAGAYL 430
HF+ + N G + CVG V C+ + I L + + VSIS +GA +
Sbjct: 284 HFIVESNGGGGGRSKRCVGLVATCMSNGITKKLRVEAKVSISASGALM 331
>03_02_0982 +
12925861-12926211,12926309-12926378,12927190-12927287,
12927467-12927615,12928083-12928198,12928521-12928617,
12929122-12929206,12929303-12929365,12929505-12929645
Length = 389
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = -3
Query: 600 LPSRFSVASSHNHFVGKQNERSVGFRQICVGTVNFCVRSSILAITSFVSISTAGAYLPVH 421
+PSR V SH+H G++ R +G V + A+T ++S STA A H
Sbjct: 53 VPSRGHVGHSHHHHHGEEVGGEASERIFRLGLAADVVLTVGKAVTGYLSGSTAIAADAAH 112
Query: 420 S 418
S
Sbjct: 113 S 113
>01_06_1510 - 37859664-37861319
Length = 551
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 301 APTHSAHYQIWRDSTDNEVQIALRHRITRMA 393
AP H H+Q++R S +ALRHR R A
Sbjct: 24 APAHG-HHQVFRCSAAKPSPLALRHRAGRPA 53
>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 165 SLKY--VNCERAIRVHVDGKYKSTFEHADQIQTMLQ 266
+LKY V+C+R R+H+D K E D + LQ
Sbjct: 1514 ALKYPCVSCQRLSRLHLDYKMLKNVEVLDNLYVFLQ 1549
>08_02_0315 + 15680170-15680304,15681166-15681318
Length = 95
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 569 WLDATLKRLGKDCENARPRNGA 634
W +T +RLG C + PR GA
Sbjct: 66 WTTSTSRRLGARCATSHPRQGA 87
>04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410
Length = 1279
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -1
Query: 653 AMRLAKLRRFAGARFRNPCRAVSASRRATI-ISLANKMSDRLASAKSALAPSIFAS 489
A + +K+R G R C V A A++ SLA +S RLA+ A+ P I AS
Sbjct: 808 ATQSSKVRSLVGDRM---CLLVQAGATASLGFSLALAVSWRLATVMMAMQPLIIAS 860
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,396,114
Number of Sequences: 37544
Number of extensions: 443677
Number of successful extensions: 1254
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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