Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060205.seq
(653 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12932| Best HMM Match : zf-C2H2 (HMM E-Value=0.13) 31 1.1
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_6998| Best HMM Match : Ribonuclease_T2 (HMM E-Value=8) 29 3.3
SB_35244| Best HMM Match : Ldl_recept_b (HMM E-Value=3.2e-11) 29 4.4
SB_55061| Best HMM Match : Defensin_beta (HMM E-Value=6.9) 29 4.4
SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 4.4
SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
SB_10868| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_12932| Best HMM Match : zf-C2H2 (HMM E-Value=0.13)
Length = 577
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -3
Query: 303 CKYSGSPCFATLSGAWSGFGRHAQ 232
CKY P + SGAW+ F RH Q
Sbjct: 6 CKYVRIPGYIAASGAWTSFPRHNQ 29
>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1338
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = -3
Query: 312 VCGC-KYSGSPCFATLSGAWSGFGRHAQTSICTCRRRGHVL 193
VCGC G W FG A+ C R+RG VL
Sbjct: 1011 VCGCCDVCAKTVTQKCGGYWGQFGTCAEGLSCVLRKRGQVL 1051
>SB_6998| Best HMM Match : Ribonuclease_T2 (HMM E-Value=8)
Length = 185
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 612 FSQSLPSRFSVASSHNHFVGKQNERSVGFRQI--CVGTVNFCVR 487
+SQS +FSV S H+H ++R+VG R+ + FC R
Sbjct: 139 YSQSHKGKFSVLSIHDH---SNSDRAVGLREFVAVLNVEEFCTR 179
>SB_35244| Best HMM Match : Ldl_recept_b (HMM E-Value=3.2e-11)
Length = 534
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Frame = -3
Query: 330 DLVMSTVCGCKYSGSPCFATLSGAW-----SGFGRHAQTSICTCRRRGHVLPVHNLHILN 166
+L +ST+C ++SGS LS W G A ++I CR G V NL
Sbjct: 332 NLALSTICLSRHSGSVDILALSTFWLCRHFGSVGILALSTIWLCRHSG---SVDNLDQST 388
Query: 165 CWRC 154
W C
Sbjct: 389 FWLC 392
>SB_55061| Best HMM Match : Defensin_beta (HMM E-Value=6.9)
Length = 350
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +2
Query: 203 PRRRQVQIDV*ACRPNPDHA---PDSVAKQGDPLYLHP 307
P R V I + C PNPD+ PDS D Y +P
Sbjct: 10 PSRSTVSISLIYCNPNPDYCYPNPDSCYPNPDSCYPNP 47
>SB_23259| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1449
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 206 RRRQVQIDV*ACRPNPDHAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSK 361
RRR +Q D+ R P+ P A G P ++ PH G L +K K
Sbjct: 536 RRRHLQNDILNGRKVPEEKPSETATNGPP-FICPHANCGRSFGARHLYLKHK 586
>SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = +2
Query: 359 KLPYAIELQEWLLEEVIPQVLCTGKYAPAVEMDTNDVIAKIDDLTQKLTVPTQIWRKPT 535
KLP A +QE + EE Q T +A A D I IDD++ Q W+ P+
Sbjct: 401 KLPDAKIMQEIMKEE--QQHFETRYHASARHTIQRDPIVYIDDISSYFGAKPQFWKHPS 457
>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 834
Score = 27.9 bits (59), Expect = 7.6
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Frame = +2
Query: 251 PDHAPDSVAKQGDPLYLHPHTVLITKSGVIQLIMKSKLPYAIELQEWL-LEEVIP-QVLC 424
P + + K P HP TVLI +I L + + L I LQ L L+ +IP QVL
Sbjct: 316 PLYKSSPLYKSSPPTSTHPSTVLIPLQVLIPLQVLTPLQVLIPLQVLLPLQVLIPLQVLI 375
Query: 425 -TGKYAPAVEMDTNDVIAKIDDLT 493
AP + T V+ + LT
Sbjct: 376 PLHVLAPLQVVITLQVLTSLQVLT 399
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -3
Query: 309 CGCKYSGSPCFATLSGAWSGFGRHAQTSICTCRRRGHVLPVHNLHILNCWRCPW 148
C C Y G+ +S + R A+ +CT R +L +N + NC RC +
Sbjct: 175 CVCVYGGTG----ISEQIAELKRGAEIIVCTPGRMIDMLTANNGRVTNCQRCTY 224
>SB_10868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 42
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -3
Query: 294 SGSPCFATLSGAWS 253
SGSPCF L G WS
Sbjct: 26 SGSPCFLNLHGVWS 39
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,016,702
Number of Sequences: 59808
Number of extensions: 502344
Number of successful extensions: 1275
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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