Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060205.seq
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AC024845-5|AAF60848.1|  719|Caenorhabditis elegans Hypothetical ...    29   3.8  
U43283-3|AAC69024.2|  880|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AF098992-7|AAC67455.2|  224|Caenorhabditis elegans Hypothetical ...    27   8.8  
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    27   8.8  
AC024755-2|AAL65800.1|  498|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical
           protein ZK632.5 protein.
          Length = 824

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +3

Query: 138 RFVAKDIASSLKYVNCERAIRVHVDGKYKSTFEHADQIQTML-QIAWQ---SRATRCICT 305
           R   +D  +SLK V+  + + V +DG+YK        ++  + Q+AW    +  TR +  
Sbjct: 93  RLSDEDFENSLKEVSLSQKLMVRIDGEYKYRLYSKPIVRNNIPQLAWDISPALRTRKVAE 152

Query: 306 HTQCSLPN 329
             + S PN
Sbjct: 153 KDEISPPN 160


>AC024845-5|AAF60848.1|  719|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.5 protein.
          Length = 719

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
 Frame = -3

Query: 630 PFRGRAFSQSLPSRFSVASSHNHFVGKQNERSVGFRQICVGTVN------FCVRSSILAI 469
           P  GR   QS  S   V  S+N  + + +  SV FR++ V T N      +    +   I
Sbjct: 126 PMLGRRVKQSDGSIPYVWESYNTILERADNVSVAFRELGVPTGNAENIGIYSKNRAEWII 185

Query: 468 TSFVSISTAGAYLPVHST*GMTSS 397
           T F + + +   +P++ T G  +S
Sbjct: 186 TEFATYNYSNVIVPIYETLGSEAS 209


>U43283-3|AAC69024.2|  880|Caenorhabditis elegans Hypothetical
           protein T25G12.6 protein.
          Length = 880

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 413 QVLCTGKYAP-AVEMDTN-DVIAKIDDLTQKLTVPTQI 520
           +V+  G   P A  +DT  DV+ K DDLT   T+ TQI
Sbjct: 837 KVIIVGLQLPDATHLDTLCDVLLKWDDLTNTETISTQI 874


>AF098992-7|AAC67455.2|  224|Caenorhabditis elegans Hypothetical
           protein F53C3.4 protein.
          Length = 224

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 518 SALAPSIFASDRQFWQ*HHLYPFQRP 441
           S  +P I+     +W+ HH+Y  Q+P
Sbjct: 71  SPASPIIYGDYHYYWEGHHVYTTQKP 96


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 532 WLPPNLRWHRQFLRQ 488
           W P  L WHR+FLRQ
Sbjct: 151 WGPAFLPWHREFLRQ 165


>AC024755-2|AAL65800.1|  498|Caenorhabditis elegans Hypothetical
           protein Y34B4A.10 protein.
          Length = 498

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 470 IAKIDDLTQKLTVPTQIWRKPTDRSFCLPT 559
           + K+ +   ++TVPT+I  +PT  S   PT
Sbjct: 260 VTKVTEAPAEVTVPTEIVTEPTTESATTPT 289


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,896,901
Number of Sequences: 27780
Number of extensions: 361097
Number of successful extensions: 921
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)