Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060204.seq
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|... 79 5e-16
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 27 1.7
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 27 2.2
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 2.9
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 26 5.1
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom... 26 5.1
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 6.7
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 25 6.7
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 8.9
>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 387
Score = 79.0 bits (186), Expect = 5e-16
Identities = 42/86 (48%), Positives = 52/86 (60%), Gaps = 2/86 (2%)
Frame = +3
Query: 255 ASFFFICIYLHIGRGIYYKSFNLKYV*LXXXXXXXXXXXXXXXX--YVLP*GQISFWGAT 428
ASFFFI +YLHIGRG+YY S+ Y LP Q+SFWGAT
Sbjct: 86 ASFFFIFLYLHIGRGLYYGSYKYPRTMTWNIGVIIFLLTIITAFLGYCLPANQMSFWGAT 145
Query: 429 VITNLLSAIPYLGTILVN*I*GGFAV 506
VITNLLSA+P++G LV+ + GGF+V
Sbjct: 146 VITNLLSAVPFIGDDLVHLLWGGFSV 171
Score = 64.9 bits (151), Expect = 9e-12
Identities = 32/92 (34%), Positives = 47/92 (51%)
Frame = +1
Query: 13 KTHPIFKIINNXXXXXXXXXXXXXXXXXXXXXALCLIIQIITGLFLTIYYTANIEIAFYR 192
K++P + NN A L+IQI+ G+ L +Y N+++AF
Sbjct: 5 KSNPFLALANNYMIDAPEPSNISYFWNFGSLLACVLVIQIVIGILLACFYIPNMDLAFLS 64
Query: 193 VNYICRNVNYG*IIRTLHANGLHFFLFAFIYI 288
V I R+VNYG ++R HANG FF F F+Y+
Sbjct: 65 VERIVRDVNYGFLLRAFHANGASFF-FIFLYL 95
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 338 NWNYNFIYTNSNCFHRLCLTLRSNIFLGGN 427
NWN +SN +RLC TL + FL GN
Sbjct: 132 NWNRLLQLDSSNLEYRLCFTL--SAFLSGN 159
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +2
Query: 338 NWNYNFIYTNSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFRNYISKLNLR 493
N +Y F + N + L+ S + L + + I+CN L R+ + N +
Sbjct: 45 NTSYTFPFENHKNISHIALSPTSTLLLSVDEEGRCILCNFLRRSVLHYFNFK 96
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 26.6 bits (56), Expect = 2.9
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +1
Query: 133 ITGLFLTIYYTANIEIAFYRVNYICR---NVNYG*IIRTLHANGLHFFLFAFIYISDE 297
+TG+F ++ E F+R+ ++C + Y I TLHA FLF+ +S +
Sbjct: 1 MTGMFFFASLFSSFESLFFRLFFVCSFFFPLLYSFIFATLHA---FVFLFSHTLVSSQ 55
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +2
Query: 365 NSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFR 466
N C+H++C + IF G + CN + R
Sbjct: 31 NPECYHKMCESCVDRIFTTGPAQCPTPGCNKILR 64
>SPAC1F5.08c |yam8|ehs1|calcium transport
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 486
Score = 25.8 bits (54), Expect = 5.1
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -3
Query: 39 NDFKNWVCFSLVP 1
N +KNW+C S++P
Sbjct: 359 NSYKNWLCASVIP 371
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -3
Query: 261 MKPISM*CSNYSTIVYISANIIYSIKSY 178
+KP+S+ S Y +IV+ +I++ K+Y
Sbjct: 1258 VKPLSLCSSGYESIVWDLTSILFDPKNY 1285
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.4 bits (53), Expect = 6.7
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -2
Query: 265 KNEAH*HVMFELFNHS---LHFGKYNLLYKKLFQYLLCNILLKIIQ 137
+NE H V E F +S + F +NLLY++L++ + IIQ
Sbjct: 732 ENEMHDDVDKEQFGYSSMYVFFRLFNLLYERLYELQRLEDQVSIIQ 777
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.0 bits (52), Expect = 8.9
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 231 YSTIVYISANIIY-SIKSYFNICCVIYC*K*SSNN 130
Y + I+ + Y S +Y+ CC +Y K SSNN
Sbjct: 1979 YFLLTAIANQLRYPSSHTYYASCCFLYLFKSSSNN 2013
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,181,549
Number of Sequences: 5004
Number of extensions: 41488
Number of successful extensions: 84
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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