Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060204.seq
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0489 + 18269824-18270270,18271659-18271948,18272341-182725... 32 0.32
05_07_0367 - 29700855-29700920,29701092-29701149,29701446-297015... 30 1.3
04_04_0582 + 26369537-26369914,26371598-26371887,26371985-263721... 30 1.3
05_07_0364 - 29611149-29611211,29611441-29611623,29611796-296118... 29 3.0
07_01_1182 + 11207282-11207330,11208015-11208094,11208181-112086... 28 6.9
06_01_0004 - 59511-59576,59749-59806,60101-60144,60455-60512,608... 27 9.2
05_07_0365 - 29662703-29662710,29664321-29664378,29664675-296647... 27 9.2
>10_08_0489 +
18269824-18270270,18271659-18271948,18272341-18272512,
18272608-18272730,18272832-18272960,18273061-18273255,
18273384-18273470,18273563-18273835,18274047-18274154,
18274769-18275116
Length = 723
Score = 32.3 bits (70), Expect = 0.32
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Frame = +3
Query: 423 ATVITNLLSAIPYLGTILVN*I*GGFAVEM--LH*PDFTHFIFYYRSLF 563
A VI+N +SA+P+L IL+ I G M LH P FTH++F+ L+
Sbjct: 496 AFVISNTISAMPFL--ILITFISGTMCYFMVRLH-PGFTHYLFFVLCLY 541
>05_07_0367 -
29700855-29700920,29701092-29701149,29701446-29701503,
29701800-29701857,29702154-29702211,29702508-29702551,
29702840-29703022,29703192-29703249,29703545-29703602,
29703897-29703954,29704250-29704307,29704956-29705013,
29705310-29705367,29705664-29705721,29706348-29706398,
29706695-29706752,29707049-29707106,29707403-29707459,
29707754-29707810,29708085-29708135,29708431-29708507,
29708785-29708842,29709139-29709195,29709490-29709546,
29709821-29709893,29710167-29710224,29710521-29710578,
29710875-29710931,29711558-29711608,29711904-29711980,
29712258-29712315,29712612-29712669,29712966-29713016,
29713667-29713717,29714014-29714057,29714368-29714444,
29714722-29714779,29715076-29715126,29715423-29715480,
29715776-29715833,29716130-29716187,29716484-29716534,
29716831-29716907,29717185-29717242,29717539-29717589,
29718240-29718316,29718594-29718651,29718947-29719004,
29719301-29719351,29719648-29719705,29723277-29723334,
29723631-29723681,29724331-29724388,29724684-29724741,
29725038-29725088,29725385-29725442,29725738-29725814,
29726092-29726148,29726444-29726501,29726798-29726848,
29727070-29727075
Length = 1209
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 347 YNFIYTNSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFRNYISKLNL-RGICCRNATLT 523
Y+ N+ CF + LR + F NR + + + +P + K L RG+CC + +
Sbjct: 89 YSTFRRNNRCF--VAYALRYSTFRRNNRCFVAYVVDPQIFDVSPKQPLLRGLCCGPSDIR 146
Query: 524 RF 529
RF
Sbjct: 147 RF 148
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 395 TLRSNIFLGGNRNYKSIICNP-LFRNYISKLNLRGICCRNATLTRF 529
TLR + F NR + + + +P +F ++ LRG+CC + + RF
Sbjct: 377 TLRYSTFRRNNRCFVAYVVDPQIFDVSPNQPQLRGLCCGPSDIRRF 422
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 395 TLRSNIFLGGNRNYKSIICNPLFRNYISKLNL-RGICCRNATLTRF 529
TLR + F NR + + + +P + K L RG+CC + + RF
Sbjct: 922 TLRYSTFRRNNRCFVAYVVDPQIFDVSPKQPLLRGLCCGPSDIRRF 967
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 395 TLRSNIFLGGNRNYKSIICNPLFRNYISKLNL-RGICCRNATLTRF 529
TLR + F NR + + + +P + K L RG+CC + + RF
Sbjct: 980 TLRYSTFRRNNRCFVAYVVDPQIFDVSPKQPLLRGLCCGPSDIRRF 1025
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 395 TLRSNIFLGGNRNYKSIICNP-LFRNYISKLNLRGICCRNATLTRF 529
TLR + F NR + + + +P +F + LRG+CC + + RF
Sbjct: 1133 TLRYSTFRRNNRCFVAYVVDPPIFDVSPKQPLLRGLCCGPSDIRRF 1178
>04_04_0582 +
26369537-26369914,26371598-26371887,26371985-26372156,
26372271-26372393,26372499-26372627,26372785-26372979,
26373128-26373214,26373296-26373568,26374166-26374273,
26374363-26374686
Length = 692
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +3
Query: 423 ATVITNLLSAIPYLGTILVN*I*GGFAVEM--LH*PDFTHFIFYYRSLF 563
A VI+N +SA+P+L +L+ + G M LH P F+H+IF+ +L+
Sbjct: 473 AFVISNTISALPFL--VLICFLSGTICYFMVRLH-PGFSHYIFFVLNLY 518
>05_07_0364 -
29611149-29611211,29611441-29611623,29611796-29611853,
29612150-29612207,29612504-29612561,29612859-29612916,
29613214-29613271,29613568-29613625,29613923-29613980,
29614277-29614334,29614631-29614688,29614983-29615040,
29615337-29615394,29615691-29615748,29616045-29616102,
29616400-29616457,29616755-29616812,29617109-29617166,
29617463-29617520,29617817-29617874,29618171-29618228,
29618525-29618582,29618878-29618935,29619233-29619290,
29619942-29619999,29620297-29620376,29620649-29620706,
29621001-29621058,29621353-29621410,29621707-29621764,
29622415-29622472,29622767-29622824,29623121-29623164,
29623475-29623532,29623829-29623886,29624537-29624594,
29624889-29624946,29625243-29625300,29625597-29625654,
29626305-29626400,29626697-29626792,29627797-29627892,
29628188-29628283,29629996-29630053,29630350-29630407,
29630704-29630799,29631096-29631191,29632196-29632253,
29632549-29632644,29633648-29633743,29634040-29634042
Length = 1114
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 395 TLRSNIFLGGNRNYKSIICNPLFRNYISKLNL-RGICCRNATLTRF 529
TLR + F NR + + + +P + + K L RG+CC + + RF
Sbjct: 630 TLRYSTFRRNNRCFVAYVVDPQIFDVLPKQPLLRGLCCGPSDIRRF 675
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +2
Query: 353 FIYTNSNCFHRLCLTLRSNIFLGGNRNYKS-IICNPLFRNYISKLNLRGICCRNATLTRF 529
F T + + LC TLR + F NR + S ++ + +F + LRG+CC + + RF
Sbjct: 965 FAETTAASWPMLC-TLRYSTFRRNNRCFVSYVVDSQIFDVSPKQPLLRGLCCGPSDIQRF 1023
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 395 TLRSNIFLGGNRNYKSIICNPLFRNYISKLNL-RGICCRNATLTRF 529
TLR + F NR + + + +P + K L RG+CC + + RF
Sbjct: 688 TLRYSTFRRNNRYFVAFVVDPQIFDVSPKQPLLRGLCCGPSDIRRF 733
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 395 TLRSNIFLGGNRNYKSIICNPLFRNYISKLNL-RGICCRNATLTRF 529
TLR + F NR + + + +P + K L RG+CC + + RF
Sbjct: 804 TLRYSTFCRNNRCFVAYVVDPQIFDVSPKQPLLRGLCCGPSDIPRF 849
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 395 TLRSNIFLGGNRNYKSIICNPLFRNYISKLNL-RGICCRNATLTRF 529
TLR + F NR + + + +P + K L RG+CC + + RF
Sbjct: 920 TLRYSTFRRNNRCFVAYVVDPQILDVSPKQPLLRGLCCGPSDIRRF 965
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 395 TLRSNIFLGGNRNYKSIICNPLFRNYISKLNL-RGICCRNATLTRF 529
TLR + F NR + + + +P + K L RG+CC + + RF
Sbjct: 468 TLRYSTFRQNNRCFVAYVVDPQIFDVSPKQPLLRGLCCGPSDIRRF 513
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 395 TLRSNIFLGGNRNYKSIICNPLFRNYISKLNL-RGICCRNATLTRF 529
TLR + F NR + + + +P + K L RG+CC + + RF
Sbjct: 572 TLRYSTFRRNNRCFVAYVVDPQIFDVSPKQPLLRGLCCGPSDIRRF 617
>07_01_1182 +
11207282-11207330,11208015-11208094,11208181-11208645,
11213485-11213568,11213925-11214113,11214191-11214277,
11214343-11214969
Length = 526
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/23 (60%), Positives = 18/23 (78%), Gaps = 2/23 (8%)
Frame = +3
Query: 417 WGAT--VITNLLSAIPYLGTILV 479
+GAT VI+N LS+IPYLG I +
Sbjct: 329 YGATEFVISNTLSSIPYLGLISI 351
>06_01_0004 - 59511-59576,59749-59806,60101-60144,60455-60512,
60810-60867,61165-61222,61871-61928,62225-62282,
62579-62636,62933-62990,63285-63328,63639-63696,
64699-64742,65053-65110,65407-65464,66114-66171,
66468-66818,68051-68108,68405-68462,68759-68816,
69113-69170,69466-69509,69820-70170,71048-71091,
71755-71812,72109-72291,72463-72520,72815-72858,
73877-73920,74584-74641,74938-74995,75292-75349,
75643-75700,75997-76179,76351-76408,76702-76745,
77056-77238,77410-77467,77766-77823,78120-78177,
78473-78530,78826-78869,79180-79362,79534-79591,
79885-79942,80239-80296,80592-80649,80946-81003,
81652-81709,82361-82440,83067-83124,83421-83603,
84127-84184,84480-84537,85188-85245,85541-85598,
85895-85950
Length = 1472
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 395 TLRSNIFLGGNRNYKSIICNPLFRNYISKLNL-RGICCRNATLTRF 529
TLR + F NR + + + +P + K L RG+CC + + RF
Sbjct: 1362 TLRYSTFRRNNRCFVAYVVDPQIFDVSPKQPLLRGLCCGPSDIRRF 1407
>05_07_0365 -
29662703-29662710,29664321-29664378,29664675-29664732,
29665029-29665086,29665737-29665794,29666091-29666134,
29666445-29666502,29666799-29666981,29667154-29667211,
29667508-29667565,29667862-29667919,29668216-29668259,
29668570-29668627,29668924-29669106,29669279-29669336,
29669633-29669676,29669987-29670044,29670341-29670398,
29670696-29670753,29671050-29671052
Length = 420
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 395 TLRSNIFLGGNRNYKSIICNPLFRNYISKLNL-RGICCRNATLTRF 529
TLR ++F NR + + + +P + K L RG+CC + + RF
Sbjct: 191 TLRYSMFRRTNRCFVAYVVDPQIFDVSPKQPLLRGLCCGPSDIRRF 236
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,385,558
Number of Sequences: 37544
Number of extensions: 207458
Number of successful extensions: 329
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -