Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060202.seq
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 28 1.0
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 27 3.1
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 27 3.1
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 26 4.2
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 26 4.2
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ... 26 5.5
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 7.3
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 25 7.3
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 25 9.6
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 25 9.6
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.6
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 302 VNNFQQFLNTIRNNFNGPCAKHDMGSSCEDTE 397
+N + + L+ ++NNF G K SC DTE
Sbjct: 212 LNEYYKSLSKLKNNFRGIIYKTTPYGSCNDTE 243
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 349 RSVRKTRHGLVLRRHRRSYRKTGSSTNIRRPRLGVGK*R 465
+S +KT+ + L + ++YR N R+ R G GK R
Sbjct: 159 QSFQKTKEAVALLKEIKAYRDVVKVANSRKLRAGKGKLR 197
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 383 CEDTEEATEKQAVQQTLDGHDWVLE-SNDFCIFVKPFILKKHYKS 514
C +TE+ T+ Q+ + H W E N+F + F K+H+ S
Sbjct: 229 CTETEQHTQTLVHFQSRNFHQWYFELVNNFNLLFYGFGSKEHFLS 273
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 349 RSVRKTRHGLVLRRHRRSYRKTGSSTNIRRPRLGVGK*R 465
+S +KT+ + L + ++YR N R+ R G GK R
Sbjct: 159 QSFQKTKEAVALLKEIKAYRDVIKVANSRKLRAGKGKLR 197
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 538 NFFKSTDPGYINKCVQAG 591
+ ST+P YINKCV G
Sbjct: 3 SIISSTNPQYINKCVNNG 20
>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 451
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = +1
Query: 511 VIQKYINFENFFKSTDPGYINKCVQAGDYYYW 606
+++ + N F+ D YI + DY YW
Sbjct: 367 ILRVLLRIRNLFEHHDVYYIYNAIVLNDYAYW 398
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = -3
Query: 369 SCFAHGPLKLFLIVFKNC*KLLTYSNNLRVPVRVFLMINDLH 244
S FA LFL K YSN +P + MIN L+
Sbjct: 547 SFFAEATCHLFLEKLPTITKTYVYSNCKEIPDHILEMINALY 588
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 290 LFEYVNNFQQFLNTIRNNFNGPCAKHDMGSSCEDTEEAT 406
L E++ + ++ + ++FN A DM S E TEEAT
Sbjct: 557 LDEFIQSGEEVEWSNFSHFNAESALADMNDSVEVTEEAT 595
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 323 LNTIRNNFNGPCAKHDMGSSCEDTEEATEKQAVQQTLDGHDWVLESN 463
L + + N +G AKHD+ D + + Q++Q D ++SN
Sbjct: 29 LTSRKYNTHGLGAKHDIADQWWDNVFSAQLQSIQVNTDNGKVAVQSN 75
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 469 LHFCKTFHFEEAL*VIQKYINFENFFKSTDPGYINKCVQAGD 594
L + + H + + Y E S DP YI CV +GD
Sbjct: 138 LDYARQSHETRVSKITENYYQAEFVPASGDPKYILDCVPSGD 179
>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 287
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = -3
Query: 456 SNTQSWPSNVC*TACFSVASSVSSQDEPMSCFAHGPLKL 340
S + PSN + S S VS P SC H P ++
Sbjct: 145 SEKEEIPSNASSISLKSQNSIVSRTSNPFSCLNHSPRQI 183
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,424
Number of Sequences: 5004
Number of extensions: 55861
Number of successful extensions: 147
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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