Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060202.seq
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0754 - 6816789-6816886,6816922-6817722,6818377-6819058           27   9.9  
07_01_0382 - 2851551-2851811,2853491-2853694,2853974-2854066,285...    27   9.9  
04_04_1121 - 31041629-31041793,31041891-31042022,31042255-310424...    27   9.9  

>12_01_0754 - 6816789-6816886,6816922-6817722,6818377-6819058
          Length = 526

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -1

Query: 521 FCMTYSASSK*KVLQKCKNRYF 456
           FC+TY+ASSK   + KC  +YF
Sbjct: 342 FCVTYNASSK---MAKCSCKYF 360


>07_01_0382 -
           2851551-2851811,2853491-2853694,2853974-2854066,
           2854155-2854272,2854766-2855064
          Length = 324

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 578 HLLMYPGSVLLKKFSKLIYFCMTYSASSK*KVLQKCKNRYFPTPSRGRLMFVELP 414
           HLL  P SV  ++    IY+C   +   + + L+ C      TP   R+MF   P
Sbjct: 101 HLLTIPKSVGYEQNPLSIYYCYDSAEQGEDEKLKMCIAEVTNTPWGERVMFTFQP 155


>04_04_1121 -
           31041629-31041793,31041891-31042022,31042255-31042425,
           31042521-31042622,31042703-31042807,31043115-31043286,
           31043916-31043980,31044179-31044502,31044729-31044846,
           31044928-31045011,31045472-31045603,31045714-31046570,
           31046735-31046849,31047371-31047481,31047763-31047824
          Length = 904

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +2

Query: 479 VKPFILKKHYKSYKNILILKIFSRAPTLDTLTNVCK 586
           +K   +KKH K+ KN+ +   F    +++T T+VCK
Sbjct: 711 LKSATVKKHIKNGKNVSMGFGFVEFDSVETATSVCK 746


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,104,000
Number of Sequences: 37544
Number of extensions: 301325
Number of successful extensions: 681
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)