Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060202.seq
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51313| Best HMM Match : Pkinase (HMM E-Value=0.43)                  31   0.62 
SB_52308| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)           29   4.4  
SB_21579| Best HMM Match : Phage_integrase (HMM E-Value=0.96)          29   4.4  
SB_49352| Best HMM Match : BDS_I_II (HMM E-Value=2.3)                  28   5.8  
SB_4866| Best HMM Match : DUF1509 (HMM E-Value=3.8)                    28   7.7  
SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)        28   7.7  

>SB_51313| Best HMM Match : Pkinase (HMM E-Value=0.43)
          Length = 456

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 407 EKQAVQQTLDGHDWVLESNDFCIFVKPFILKKHYKSYKNI 526
           EKQ V   LDG  W +ES   C+ +  F L +  K  KN+
Sbjct: 175 EKQLVYM-LDGERWTVESRGLCVSLIDFTLSRLRKVKKNV 213


>SB_52308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1407

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/92 (22%), Positives = 41/92 (44%)
 Frame = +2

Query: 371 MGSSCEDTEEATEKQAVQQTLDGHDWVLESNDFCIFVKPFILKKHYKSYKNILILKIFSR 550
           M  S    ++AT    +++  +G+  +    D C+ +  +    H+KS   + I++ FS+
Sbjct: 349 MKGSVSSDDDATSCD-LEEHCNGNRHITHG-DICVIIPEYNFSGHFKSEFFLEIIEDFSQ 406

Query: 551 APTLDTLTNVCKRAITIIGPTGPKGRLSLLTD 646
            P + +   V    + +    GP G L   TD
Sbjct: 407 QPPVKSREMVASEILRL----GPHGALFFRTD 434


>SB_53562| Best HMM Match : Exo_endo_phos (HMM E-Value=0.018)
          Length = 721

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -3

Query: 645 SVKRESLPFGPVGPIIVIARLHTFVNVSRVGALEKIFKINIFLYDL 508
           S +   LPFG +   + ++ LH    VSR G     F+++  + DL
Sbjct: 452 SARHSRLPFGHIRRSVQLSALHQHEEVSRAGWKTFAFELSTVISDL 497


>SB_21579| Best HMM Match : Phage_integrase (HMM E-Value=0.96)
          Length = 290

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +2

Query: 200 RRA*RQNVRD*QLARCKSLIIRNTRTGTRRLFEYVNNFQQFLNTIRNNFNGPCAKHDMG- 376
           R+  R+NV   +L  C  +I+   R   +RL++  N ++Q L+           ++ MG 
Sbjct: 25  RKVTRRNVYLLELGSCMLIILSGYRVSVKRLYDVTNLYRQGLSVYAFTV---ARRNTMGD 81

Query: 377 -SSCEDTEEATEKQA 418
            +  ++TEE T   A
Sbjct: 82  QNDPKETEETTSSTA 96


>SB_49352| Best HMM Match : BDS_I_II (HMM E-Value=2.3)
          Length = 312

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +2

Query: 197 KRRA*RQNVRD*-QLARCKSLIIRNTRTGTRRLFEYVNNFQQFLNTIRNNFNGPCAKHDM 373
           +RR  ++  R+  Q+ +   +  R+ R   R L +   NF +F+N   N FN     +  
Sbjct: 104 RRRGEQEQQREYWQVNKSSQIASRSWRVRLRALKKIKTNFGKFVNPYANRFNNGIPTYSE 163

Query: 374 GSSCEDTEEATEKQAVQQ 427
             S E      +++A ++
Sbjct: 164 ERSLERARRKEKERAAEE 181


>SB_4866| Best HMM Match : DUF1509 (HMM E-Value=3.8)
          Length = 1065

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/69 (23%), Positives = 29/69 (42%)
 Frame = +2

Query: 416  AVQQTLDGHDWVLESNDFCIFVKPFILKKHYKSYKNILILKIFSRAPTLDTLTNVCKRAI 595
            A++QT     WV  +N     V+  +++ H K+Y  +     F   P++        R +
Sbjct: 832  AIEQTRPSDMWVCSTNSMGALVQQRLIEHHRKNYPRLPATIRFDPDPSVAHRYRKQGRPV 891

Query: 596  TIIGPTGPK 622
             + G  G K
Sbjct: 892  PVPGKRGEK 900


>SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)
          Length = 1500

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 296 EYVNNFQQFLNTIRNNF-NGPCAKHDMGSSCEDTEEAT 406
           E  N+ Q+ L T+RNNF N   ++HD+       EE T
Sbjct: 516 ELNNSLQRQLETLRNNFINRSPSRHDLEELARLREEVT 553


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,728,839
Number of Sequences: 59808
Number of extensions: 403182
Number of successful extensions: 1110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1108
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)