Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060202.seq
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-11|CAA99905.4|  394|Caenorhabditis elegans Hypothetical p...    28   5.1  
AF106575-16|AAC78161.2|  334|Caenorhabditis elegans Serpentine r...    27   8.9  

>Z75547-11|CAA99905.4|  394|Caenorhabditis elegans Hypothetical
           protein R11D1.10a protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 186 NFFLKDVPEDKTYEINN-LQDANH*SLETREQEHADCLSTLTIFNSS 323
           N    +  +++  EINN LQDA     ET++QE  D     T+  S+
Sbjct: 253 NTEFSEATKEEMNEINNILQDAEQRVAETKKQEEHDAAELRTLMKST 299


>AF106575-16|AAC78161.2|  334|Caenorhabditis elegans Serpentine
           receptor, class h protein3 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 476 FVKPFILKKHYKSYKNILILKIFSRAPTLDTLTNVCKRAITIIGP 610
           FV  F   KH+  Y+N+L+  IFS    LD +  V  + +TI+ P
Sbjct: 34  FVLIFKTPKHFSKYRNLLMAHIFS-GFLLDIVMGVLWK-VTIVLP 76


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,997,719
Number of Sequences: 27780
Number of extensions: 317830
Number of successful extensions: 776
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)