Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060202.seq
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   1.9  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   5.9  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 490 ERFYKNAKIVTFQ 452
           + F+KNAK VTFQ
Sbjct: 122 DSFFKNAKSVTFQ 134


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 379 RAHVVFCARTVKVVSNCV 326
           +AHV+    T K++ NCV
Sbjct: 16  QAHVIPAELTAKLLGNCV 33


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 115 QKSPSIFT*NKNANKRFQQH 56
           Q+SP +   N +  KR+Q+H
Sbjct: 84  QQSPYLMYENPDEEKRYQEH 103


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 520 KYINFENFFKSTDPGYINKCVQAGDYYYWPNWPKGQA 630
           KYINF+ FF     G  N  V   DYY++    + QA
Sbjct: 8   KYINFDRFF--FIEGMTN--VLDFDYYFYDYSNRTQA 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,800
Number of Sequences: 438
Number of extensions: 3788
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)