Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060201.seq
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho...    32   0.060
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    26   3.0  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    26   4.0  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    25   9.1  
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    25   9.1  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    25   9.1  

>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
           5',5'''-p1,p6-hexaphosphate hydrolase Aps1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 31.9 bits (69), Expect = 0.060
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +1

Query: 406 RRAACICVRSDAETEVLLVTSSRRXDNWIVPGGG 507
           R AA +   S  + +VLLV+S+++  +W+VP GG
Sbjct: 42  RLAAGVVALSADKRKVLLVSSAKKHPSWVVPKGG 75


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
 Frame = -1

Query: 512 LSPPPGTIQLSXRLEDVTSRTSVSASERTQIHAARRXKPSSSYILI--ELGFSFTIFVCK 339
           L PPP T++LS   ++V  R  V        ++    KP++   +I  +   SF  F   
Sbjct: 116 LLPPPSTLELSENRQNVLERVKV-------FNSCSPPKPTNPITIIDNDKTHSFKKFYKS 168

Query: 338 HVNTNETN--DHKINTDIN--*KEKL*NEQNF 255
            V  +E N  + KIN  +N    + L N  NF
Sbjct: 169 LVKEDEENGIEKKINEAMNSSASQPLPNSTNF 200


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 237 HIRCILCRTYPFSTIKLHNVHKKSNYNNNKTTI 139
           HIR +L R Y FS       ++ S+++NN   I
Sbjct: 256 HIRVLLERDYKFSNDSYFTFYEGSSWHNNDAGI 288


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 520 SSGSLPRPXQSSCRXVSKTSPAGP 449
           +S S+PR  +S  +  S TSP  P
Sbjct: 63  NSSSIPRESESEGKTASNTSPLSP 86


>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -1

Query: 515 RLSPPPGTIQLSXRLEDVTSRTSVSASERTQIHAARRXKPSSSYILIEL 369
           +L+PPP  + +   ++ VT    V    + QIH   R  P + ++ + L
Sbjct: 177 KLAPPPNYMSVQQEIDWVTRHMLVDWIVQVQIHF--RLLPETLFLAVNL 223


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 92  PMLNGLTFSFFAKIENKVTIGKRC 21
           P+L  LTFS   +++N +T+ K C
Sbjct: 585 PLLAKLTFSHEEQVDNVLTLQKYC 608


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,145
Number of Sequences: 5004
Number of extensions: 34843
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)