Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060201.seq
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0451 - 29476892-29477516,29477600-29477843,29478313-294787...    28   4.0  
06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-27...    28   5.3  
11_06_0207 + 21214631-21216121                                         27   7.0  
11_06_0090 - 19935413-19935586,19935913-19936054,19936935-19936987     27   9.2  

>01_06_0451 -
           29476892-29477516,29477600-29477843,29478313-29478714,
           29481164-29481358,29481418-29481537,29481615-29481683,
           29481901-29481999,29483857-29483946,29484049-29484180,
           29485062-29485173
          Length = 695

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 522 PLPALSPARXNPVVGPSRRRHQQDL 448
           PLPA  P   +PVV P + RH   L
Sbjct: 135 PLPANKPYPNSPVVAPPKGRHHHSL 159


>06_01_0027 -
           271199-271424,271628-272095,272721-273018,273133-273343,
           273427-274124,274921-274969,276059-276112,276244-276275,
           276319-276484,276563-276628,276717-276812,276868-276957,
           277302-277398,277496-277575,277709-277753,278006-278134,
           278593-278722,278888-279222,279918-280053,280149-280328,
           280422-280679,280752-281137
          Length = 1409

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 524 LLFRLSPPPGTIQLSXRLEDVTSRTSVSASER 429
           L F + PPPG +++S R     +R S S+S +
Sbjct: 16  LSFSVPPPPGDVRISSRPPTTATRCSSSSSPK 47


>11_06_0207 + 21214631-21216121
          Length = 496

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +1

Query: 352 MVKEKPNSIRIYDDDGFXRRAACICVRSDAETEVLLVTSSRRXDNWIVPGG 504
           ++K  P  I ++D +   R+     + S   + V +  S  + D W VP G
Sbjct: 422 LIKNGPRDIGVFDLENRRRKKTISPIWSSWPSPVWITPSIAKADGWCVPCG 472


>11_06_0090 - 19935413-19935586,19935913-19936054,19936935-19936987
          Length = 122

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 512 LSPPPGTIQLSXRLEDVTSRTSVSASERTQIH--AARRXKPSSSYI 381
           L+PPP +++LS R E  T+ ++         H  A RR + + +Y+
Sbjct: 23  LAPPPSSVRLSLRDEQSTAASAARQQPPATAHSRAHRRQQGTPTYL 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,508,022
Number of Sequences: 37544
Number of extensions: 215792
Number of successful extensions: 420
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)