Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060201.seq
         (524 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)              68   5e-12
SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05)                   68   5e-12
SB_14645| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   1.8  
SB_49950| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-29)                 28   5.4  
SB_16078| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_36077| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_48660| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_56731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 67.7 bits (158), Expect = 5e-12
 Identities = 26/52 (50%), Positives = 36/52 (69%)
 Frame = +1

Query: 352 MVKEKPNSIRIYDDDGFXRRAACICVRSDAETEVLLVTSSRRXDNWIVPGGG 507
           M+K      R YD+DG+ +RA C+C R++ E EVLLV+SS+  D W+VP GG
Sbjct: 83  MIKNSNKGSRTYDEDGYVKRAGCVCFRTELEKEVLLVSSSKHPDKWVVPAGG 134


>SB_18314| Best HMM Match : NUDIX (HMM E-Value=2e-05)
          Length = 169

 Score = 67.7 bits (158), Expect = 5e-12
 Identities = 26/52 (50%), Positives = 36/52 (69%)
 Frame = +1

Query: 352 MVKEKPNSIRIYDDDGFXRRAACICVRSDAETEVLLVTSSRRXDNWIVPGGG 507
           M+K      R YD+DG+ +RA C+C R++ E EVLLV+SS+  D W+VP GG
Sbjct: 48  MIKNSNKGSRTYDEDGYVKRAGCVCFRTELEKEVLLVSSSKHPDKWVVPAGG 99


>SB_14645| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = -1

Query: 434 ERTQIHAARRXKPSSSYILIELGFSFTIFVCKHVNTNETNDHKINTDIN*KEKL*N 267
           +RT     R  + +   +++  GF   +  CK  N +E N+ K N   N ++K  N
Sbjct: 53  DRTSTEPERSVRNALKAMILVYGFLQVLSHCKKQNASENNESKTNKSTNERKKCGN 108


>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1270

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
 Frame = -3

Query: 375  RIRLLLYHFCLQTRKHERNERSQN*Y--RH*LKRKTMKRTKFLMINK---RH--IRCILC 217
            RIRL   H   + R H+R+E S+N    RH + RK ++     + N+   RH   R  L 
Sbjct: 842  RIRLHDKHEASRNRLHDRHEASRNRLRDRHEVSRKRLRDRHKALCNRLCDRHEVSRKRLR 901

Query: 216  RTYPFSTIKLHNVHKKS 166
              +  S I+LH+ H+ S
Sbjct: 902  DRHKASRIRLHDRHEAS 918


>SB_49950| Best HMM Match : 7tm_1 (HMM E-Value=5.7e-29)
          Length = 349

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 233 IWRLLIIKNFVRFIVFLFN*CLY*FCDRSFRSCLRVCKQKW*RR 364
           IW  ++I + +RF+  L N   Y F  + FR  +R C   W RR
Sbjct: 265 IWAEILIVH-LRFLTSLLNPLFYVFGKKDFRGAIRCC---WLRR 304


>SB_16078| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 392

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = -3

Query: 258 FLMINKRHIRC---ILCRTYPFSTIKLHNVHKKSNYNN-NKTT 142
           +  +N+R+ R    + CRT  F  +K  N H + +YNN N+T+
Sbjct: 325 YAALNERYARSFTRLFCRT--FKNLKSFNAHAEPSYNNVNQTS 365


>SB_36077| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 219 CRTYPFSTIKLHNVHKKSNYNNNKTTI 139
           CR++PF T K  N+H+  N+N+++  I
Sbjct: 174 CRSFPFKTSKGFNIHQ--NWNDDEIFI 198


>SB_48660| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 219 CRTYPFSTIKLHNVHKKSNYNNNKTTI 139
           CR++PF T K  N+H+  N+N+++  I
Sbjct: 113 CRSFPFKTSKGFNIHQ--NWNDDEIFI 137


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,850,005
Number of Sequences: 59808
Number of extensions: 259999
Number of successful extensions: 623
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)