Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060201.seq
         (524 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         25   1.6  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   6.3  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   6.3  
AY214334-1|AAP69612.1|  519|Anopheles gambiae nicotinate phospho...    23   6.3  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 25.0 bits (52), Expect = 1.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 423 NTCRPSXKTVVVIYPYRIRLL 361
           N CRP  +TV  +Y  R+ L+
Sbjct: 842 NECRPDAETVAYLYHIRMELI 862


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 415 ACICVRSDAETEVLLVTSSRRXDNW 489
           +C CVR  AE   +L  S++  ++W
Sbjct: 473 SCFCVRFIAEHTKMLEDSTKVKEDW 497


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 415 ACICVRSDAETEVLLVTSSRRXDNW 489
           +C CVR  AE   +L  S++  ++W
Sbjct: 473 SCFCVRFIAEHTKMLEDSTKVKEDW 497


>AY214334-1|AAP69612.1|  519|Anopheles gambiae nicotinate
           phosphoribosyltransferase-like protein protein.
          Length = 519

 Score = 23.0 bits (47), Expect = 6.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 486 VVGPSRRRHQQDLCFGI*THANTCR 412
           ++  + + H+ D CFGI TH  TC+
Sbjct: 338 ILSLNEQGHKID-CFGIGTHLVTCQ 361


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 498,828
Number of Sequences: 2352
Number of extensions: 9283
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 48205926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)