Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060200.seq
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10 |Schizo...    58   1e-09
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    27   3.1  

>SPBC215.09c |erg10||acetyl-CoA C-acetyltransferase Erg10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 25/57 (43%), Positives = 39/57 (68%)
 Frame = +2

Query: 317 IFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSS 487
           ++IV A RTP G+FGG F +  AT+L +IA  GAL+   + P+ VD + +G V+S++
Sbjct: 6   VYIVSAVRTPMGSFGGSFASLPATKLGSIAIKGALERVNIKPSDVDEVFMGNVVSAN 62



 Score = 30.7 bits (66), Expect = 0.19
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 508 ARXAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQ 612
           AR  AL AG+P+      +N++C SG ++ +  AQ
Sbjct: 68  ARQCALGAGLPRSIVCTTVNKVCASGMKATILGAQ 102


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 344 PFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMV 463
           P G  G    + + T+ Q I  +  L    V PAQ+DS++
Sbjct: 270 PSGPMGMKTGSVNDTQSQQITLMNVLASQNVPPAQIDSIM 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,291,579
Number of Sequences: 5004
Number of extensions: 41898
Number of successful extensions: 126
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)