Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060200.seq
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0075 + 3916373-3916400,3916760-3916858,3916943-3917116,391... 50 2e-06
01_01_0071 + 548255-548399,548478-548651,548787-548892,548992-54... 45 5e-05
10_08_0258 + 16261454-16261540,16261636-16261712,16262734-162628... 38 0.005
02_05_1230 - 35099942-35100018,35100138-35100221,35100367-351004... 38 0.005
02_05_0052 - 25433204-25434151 32 0.46
12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-53... 29 2.4
11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-45... 29 3.2
11_06_0367 - 22747760-22748931,22750324-22750550,22751035-22751075 29 4.2
11_06_0364 - 22727978-22729149,22730475-22730727,22731628-227319... 29 4.2
11_08_0066 - 28131521-28132012 28 5.6
09_02_0523 + 10196272-10196375,10196551-10197488,10200247-102008... 27 9.8
>09_02_0075 +
3916373-3916400,3916760-3916858,3916943-3917116,
3917207-3917312,3917671-3917809,3918457-3918534,
3918863-3918928,3919213-3919298,3919939-3920038,
3920245-3920355,3920457-3920498,3920671-3920757,
3921013-3921102
Length = 401
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/57 (43%), Positives = 34/57 (59%)
Frame = +2
Query: 317 IFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSS 487
+ +VG RTP G F G + SAT+L +IA ALK A V PA V + G V+S++
Sbjct: 11 VCVVGVARTPMGGFLGALSSLSATKLGSIAIEAALKRANVDPALVQEVFFGNVLSAN 67
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 508 ARXAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQ 612
AR AAL AGIP +N++C SG ++ + +AQ
Sbjct: 73 ARQAALGAGIPNTVVCSAVNKVCASGMKATMFAAQ 107
>01_01_0071 +
548255-548399,548478-548651,548787-548892,548992-549130,
549216-549293,549395-549460,550061-550201,550417-550527,
550614-550655,550739-550825,551033-551118,551681-551684
Length = 392
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +2
Query: 317 IFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSS 487
+ IVG RTP G G + AT+L ++A AL+ A V PA V + +G V+S++
Sbjct: 17 VCIVGVARTPIGALLGSLSSLPATKLGSVAIQAALRRANVEPALVQEVFMGNVLSAN 73
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +1
Query: 508 ARXAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQ 612
AR AAL AG+P P +N++C SG ++++ +AQ
Sbjct: 79 ARQAALGAGLPDTVPCTTVNKVCSSGMKAVMLAAQ 113
>10_08_0258 +
16261454-16261540,16261636-16261712,16262734-16262818,
16262931-16263057,16263147-16263245,16263343-16263410,
16263514-16263621,16263727-16263804,16263921-16264053,
16264138-16264234,16264465-16264588,16264668-16264776,
16264899-16264982,16265071-16265180
Length = 461
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 496 RNLHARXAALKAGIPQEKPVLGINRLCGSGFQSIVNSA 609
R + R AA AG P P++ +NR C SG Q++ N A
Sbjct: 111 RAIECRMAAFYAGFPDTVPLMTVNRQCSSGLQAVANVA 148
>02_05_1230 -
35099942-35100018,35100138-35100221,35100367-35100475,
35100564-35100687,35101157-35101253,35101375-35101507,
35101654-35101731,35101821-35101928,35102011-35102078,
35102181-35102279,35102379-35102505,35102623-35102707,
35103297-35103373,35103482-35103562
Length = 448
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 496 RNLHARXAALKAGIPQEKPVLGINRLCGSGFQSIVNSA 609
R + R AA AG+P+ PV +NR C SG Q++ + A
Sbjct: 109 RAIECRAAAFYAGVPENVPVRTVNRQCSSGLQAVADVA 146
>02_05_0052 - 25433204-25434151
Length = 315
Score = 31.9 bits (69), Expect = 0.46
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +2
Query: 362 GVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTHVTRRSK 529
G+F N ++ ELQ I +G + G+SP Q +V G +S T G T + S+
Sbjct: 239 GLFDNVTSEELQRIVAMG--RALGLSPKQTADVVAGFAYEASTTMGRDTPFSLESR 292
>12_01_0063 - 535364-536085,536226-536439,536989-537981,538238-538255,
538601-538860,539950-540073,540978-541310,541447-541531,
541683-541768,541843-541941,542041-542180,542717-543043,
543163-543774,543887-543971,543972-544067,544147-544500,
544536-544559,544597-544707,544811-544894,545468-545546,
546122-546279,546412-546528,546622-546780,546857-546939,
547525-547627,549184-549495
Length = 1925
Score = 29.5 bits (63), Expect = 2.4
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
Frame = +1
Query: 373 QHIRDRTADDSHGWCLEGGRSVPGSGRQHGRGPSHLFITN*RNLHARXAALKAGIPQEKP 552
+ + R + S+G G SVP S S F N N PQ
Sbjct: 752 EQVSMRNSRLSNGGAHPGETSVPPSSNFGMARSSSWFDMNSGNFSVAFRTPPVSPPQHDY 811
Query: 553 VLGINRLCGSGFQ-SIVNSAQGHFDPAHQXSQ*P 651
+ G+ R+C F+ ++NS G DP S P
Sbjct: 812 LTGLRRVCSMEFRPHVLNSPDGLADPLLSSSAAP 845
>11_01_0061 - 456521-457389,457534-457659,458377-459307,459564-459581,
459924-460183,461834-461918,462587-462919,463053-463137,
463289-463374,463455-463556,463656-463795,464332-464658,
464778-465389,465502-465586,465587-465682,465762-466115,
466212-466322,466426-466509,467086-467164,467742-467899,
468034-468150,468240-468398,468475-468557,469098-469200,
470784-471080
Length = 1899
Score = 29.1 bits (62), Expect = 3.2
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 1/94 (1%)
Frame = +1
Query: 373 QHIRDRTADDSHGWCLEGGRSVPGSGRQHGRGPSHLFITN*RNLHARXAALKAGIPQEKP 552
+ + R + S+G G SVP S S F N N PQ
Sbjct: 739 EQVSMRNSRLSNGGAHPGETSVPPSSNFGMARSSSWFDMNSGNFSMAFRTPPVSPPQHDY 798
Query: 553 VLGINRLCGSGFQ-SIVNSAQGHFDPAHQXSQ*P 651
+ G+ R+C F+ ++NS G DP S P
Sbjct: 799 LTGLRRVCSMEFRPHVLNSPDGLADPLLSSSAAP 832
>11_06_0367 - 22747760-22748931,22750324-22750550,22751035-22751075
Length = 479
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 394 QFGRGCVAEDSA-EGTKRRPFSAHDENPHYCDSKSNLLFRSRDQ 266
Q GRG S EG+K R S+ PHYC L+ RS+D+
Sbjct: 411 QAGRGEKPCTSCFEGSKPRSLSSGSMRPHYCTCHRKLM-RSKDR 453
>11_06_0364 - 22727978-22729149,22730475-22730727,22731628-22731963,
22732306-22732512,22734988-22735686,22736441-22736590,
22740204-22740962,22741023-22741235
Length = 1262
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 394 QFGRGCVAEDSA-EGTKRRPFSAHDENPHYCDSKSNLLFRSRDQ 266
Q GRG S EG+K R S+ PHYC L+ RS+D+
Sbjct: 1194 QAGRGEKPCTSCFEGSKPRSLSSGSMRPHYCTCHRKLM-RSKDR 1236
>11_08_0066 - 28131521-28132012
Length = 163
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 463 RGPSHLFITN*RNLHARXAALKAGIPQEKPVLGINRLCGSGFQ 591
R PSH + R H R K KP++ +CG GFQ
Sbjct: 79 RFPSHQALGGHRTSHLRPTTNKRRPGPSKPLIHACEVCGLGFQ 121
>09_02_0523 +
10196272-10196375,10196551-10197488,10200247-10200896,
10201003-10201746
Length = 811
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 400 DSHGWCLEGGRSVPGSGRQHGRGPSHLFIT 489
D+ G L R + G G HGR P H ++
Sbjct: 348 DATGMLLNWNRDLTGKGDSHGRTPLHFAVS 377
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,513,725
Number of Sequences: 37544
Number of extensions: 316745
Number of successful extensions: 960
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 960
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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