Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060200.seq
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   1e-06
SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   8e-05
SB_3115| Best HMM Match : AAA (HMM E-Value=0)                          31   0.62 
SB_47569| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)                   28   5.7  
SB_52818| Best HMM Match : CUB (HMM E-Value=1.6e-23)                   28   7.6  
SB_21796| Best HMM Match : COLFI (HMM E-Value=0)                       28   7.6  

>SB_30176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
 Frame = +2

Query: 332 AKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYT- 508
           AKRT FG FGG  ++ +AT L   A+V A++   V PA VDS++ G V+  +  D  Y  
Sbjct: 709 AKRTAFGAFGGRLKDFTATVLGEHASVAAMESGKVDPATVDSVIFGNVLQCA-NDAAYVA 767

Query: 509 -HVTRRSKL 532
            H+  +SK+
Sbjct: 768 RHIGIKSKV 776



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 19/35 (54%), Positives = 25/35 (71%)
 Frame = +1

Query: 508 ARXAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQ 612
           AR   +K+ +P   P L +NRLCGSGFQSI++ AQ
Sbjct: 767 ARHIGIKSKVPVTTPALTVNRLCGSGFQSIISGAQ 801


>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 22/61 (36%), Positives = 33/61 (54%)
 Frame = +2

Query: 317 IFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTD 496
           + I  A RTP G+  G   +  A EL +I    AL  A +SP  V  +++GQV+++ Q  
Sbjct: 10  VIIACAVRTPVGSHNGDLSSLKAHELGSIVVKEALCRASISPCDVSEVILGQVLTAGQGQ 69

Query: 497 G 499
           G
Sbjct: 70  G 70



 Score = 38.3 bits (85), Expect = 0.005
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +1

Query: 508 ARXAALKAGIPQEKPVLGINRLCGSGFQSI 597
           AR AA+ AGIP   P  G+N LCGSG +++
Sbjct: 72  ARQAAIHAGIPACVPAYGVNMLCGSGLKAV 101


>SB_3115| Best HMM Match : AAA (HMM E-Value=0)
          Length = 913

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 412 WCLEGGRSVPGSGRQHGRGPSHLFITN*RNLH 507
           W L  GR VPG GR+ G   S+ F++N   LH
Sbjct: 65  WYLLAGRRVPGGGRKGGILGSNPFVSNSYKLH 96


>SB_47569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 406 GYRLQFGRGCVAEDSAEGTKRRPFSAHD-ENPHYCDSKSNLLFRSR 272
           GYR++     +   + EGTK R F  HD + P  C SKS  L+R+R
Sbjct: 11  GYRVRLLTEMLVVQAHEGTKGRIFFWHDKKTPSKCTSKS--LWRNR 54


>SB_42606| Best HMM Match : Ank (HMM E-Value=3.4e-08)
          Length = 551

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +2

Query: 359 GGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTHVTRRSKLV 535
           GGV   +SAT +  +  VG++     S   + + +V +   S Q DG+     R + L+
Sbjct: 385 GGVSPTSSATGVDNLTHVGSVPTCTSSGGLICTCIVKKEYDSPQVDGVILEFLRGAGLL 443


>SB_52818| Best HMM Match : CUB (HMM E-Value=1.6e-23)
          Length = 898

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +1

Query: 433 SVPGSGRQHGRGPSHLFITN*RNLHARXAALKAGIPQEKPVLGINRLC 576
           SVP +G+ H   P+    +N  +   + A ++ G P   P++ I  +C
Sbjct: 355 SVPYTGKSHALTPTPTENSNSSHDKFKRACIQGGAPDNTPLIAIPLVC 402


>SB_21796| Best HMM Match : COLFI (HMM E-Value=0)
          Length = 1239

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
 Frame = -1

Query: 498 PSVCDEEMTWPTTMLST*AGDTPASFK-----APTVAIVC 394
           P VC E + WP T  +    + PA  +     A TV +VC
Sbjct: 738 PRVCKEALAWPVTRATKETAECPARLELVERLAQTVDLVC 777


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,507,158
Number of Sequences: 59808
Number of extensions: 343688
Number of successful extensions: 956
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)