Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060200.seq
         (651 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    26   0.90 
AJ404478-1|CAC16182.1|   77|Anopheles gambiae putative GATA fact...    23   6.3  
CR954257-1|CAJ14152.1|  324|Anopheles gambiae putative dodecenoy...    23   8.4  
AF164153-1|AAD47077.1|  131|Anopheles gambiae ribosomal protein ...    23   8.4  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    23   8.4  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 26.2 bits (55), Expect = 0.90
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 397 DDSHGWCLEGGRSVPGSGRQHGRG 468
           DD +G    GGR   G GR  GRG
Sbjct: 61  DDGYGGGGRGGRGGRGGGRGRGRG 84


>AJ404478-1|CAC16182.1|   77|Anopheles gambiae putative GATA factor
           protein.
          Length = 77

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 452 RPEPGTLRPPSRHQ 411
           R  PGT RPP+R Q
Sbjct: 27  RQNPGTNRPPNRSQ 40


>CR954257-1|CAJ14152.1|  324|Anopheles gambiae putative
           dodecenoylCoA deltaisomerase protein.
          Length = 324

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -3

Query: 385 RGCVAEDSAEGTKRRPFSAHDENPHYCDSKSNL 287
           R C     + GT ++  ++H E P   + ++N+
Sbjct: 23  RDCTTTTESTGTDQQMANSHPEEPIVVEKENNI 55


>AF164153-1|AAD47077.1|  131|Anopheles gambiae ribosomal protein S17
           protein.
          Length = 131

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 161 ERRDNLVPHCRALE 120
           ERRDN VP   ALE
Sbjct: 79  ERRDNYVPDVSALE 92


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 445 SGRQHGRGPSHLFITN*RNLHARXAALKAGIPQEKPVLGINRL 573
           +GRQH R  S  + T   N  +   AL+A   QE+ V  I  +
Sbjct: 296 AGRQHDRCDSRRWKTTQFNRQSFRVALRANNFQERAVSHIGMI 338


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,027
Number of Sequences: 2352
Number of extensions: 11536
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 64395870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)