Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060200.seq
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81546-11|CAB04455.2|  394|Caenorhabditis elegans Hypothetical p...    69   2e-12
U41105-5|AAA82398.1|  390|Caenorhabditis elegans Hypothetical pr...    51   6e-07
U41105-4|AAA82397.2|  407|Caenorhabditis elegans 3-ketoacyl-coa ...    47   1e-05
U41105-8|AAA82403.1|  460|Caenorhabditis elegans Hypothetical pr...    42   4e-04
M77697-2|AAA27897.2|  448|Caenorhabditis elegans Hypothetical pr...    39   0.003
Z79694-8|CAB01965.1|  872|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z72506-9|CAA96622.1|  872|Caenorhabditis elegans Hypothetical pr...    29   3.8  
X08068-1|CAA30857.1|  882|Caenorhabditis elegans paramyosin prot...    29   3.8  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   3.8  
AC024877-5|AAF60899.1|  197|Caenorhabditis elegans Hypothetical ...    28   5.0  
U61953-3|AAC48071.3|  491|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ...    27   8.7  

>Z81546-11|CAB04455.2|  394|Caenorhabditis elegans Hypothetical
           protein F53A2.7 protein.
          Length = 394

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 34/63 (53%), Positives = 44/63 (69%)
 Frame = +2

Query: 317 IFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTD 496
           +FIVGAKRT FGTFGG  +  SAT+L  +A+  ALK A V    VD ++ G V++SS+ D
Sbjct: 6   VFIVGAKRTAFGTFGGKLKGLSATDLGVVASQAALKHANVGADAVDHVIFGNVVASSR-D 64

Query: 497 GIY 505
           GIY
Sbjct: 65  GIY 67



 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 20/35 (57%), Positives = 27/35 (77%)
 Frame = +1

Query: 508 ARXAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQ 612
           +R   LK+G+PQ    L +NRLCGSGFQ++VN+AQ
Sbjct: 69  SRHIGLKSGVPQNVGALTVNRLCGSGFQAVVNAAQ 103


>U41105-5|AAA82398.1|  390|Caenorhabditis elegans Hypothetical
           protein T02G5.7 protein.
          Length = 390

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 25/72 (34%), Positives = 43/72 (59%)
 Frame = +2

Query: 317 IFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTD 496
           +FI+   RTP G + G F N  A EL T+A   A++ +GV+P +++ ++ G V+ +    
Sbjct: 6   VFILSGARTPIGAYRGSFANFGAVELGTVAAKAAIERSGVAPEKIEEVIGGCVLPA---- 61

Query: 497 GIYTHVTRRSKL 532
           G+  +VTR+  L
Sbjct: 62  GLGQNVTRQISL 73



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 511 RXAALKAGIPQEKPVLGINRLCGSGFQSIVNSA 609
           R  +L AG+P     + +N++C S  +++V +A
Sbjct: 69  RQISLSAGLPVTTQAVTVNKVCSSSMKALVTAA 101


>U41105-4|AAA82397.2|  407|Caenorhabditis elegans 3-ketoacyl-coa
           thiolase protein 1 protein.
          Length = 407

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 21/56 (37%), Positives = 33/56 (58%)
 Frame = +2

Query: 320 FIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSS 487
           FIVGA RTP G+F     + +A EL ++A   AL+   V P+ +  + +GQV  ++
Sbjct: 25  FIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEVFLGQVCQAN 80



 Score = 33.5 bits (73), Expect = 0.13
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +1

Query: 508 ARXAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQGHFDPAHQ 636
           AR AAL AG+     V  +N++C SG ++I+ +AQ      HQ
Sbjct: 86  ARQAALGAGLDLSVAVTTVNKVCSSGLKAIILAAQ-QIQTGHQ 127


>U41105-8|AAA82403.1|  460|Caenorhabditis elegans Hypothetical
           protein T02G5.4 protein.
          Length = 460

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
 Frame = +2

Query: 320 FIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVD--SMVVGQV 475
           FIVGA RTP G+F     + +A EL ++A   AL+   V P+ +   ++ +GQV
Sbjct: 103 FIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEANVFLGQV 156



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 4/112 (3%)
 Frame = +1

Query: 307 NNGDFHRGR*KDAVWYLRRSLPQHIRDRTADDSHGWCLEGGRSVPGSGRQHGRGPSHLFI 486
           N   F  G  +  +   R SL        A  +    LE G   P S ++       +  
Sbjct: 99  NKDAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEANVFLGQVCH 158

Query: 487 TN*RNLHARXAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQ----GHFDPA 630
            N     AR AAL AG+     V  +N+   SG ++I+ +AQ    GH D A
Sbjct: 159 ANAGQASARQAALGAGLDLSVAVTTVNKGWSSGMKAIILAAQQIQTGHQDLA 210


>M77697-2|AAA27897.2|  448|Caenorhabditis elegans Hypothetical
           protein B0303.3 protein.
          Length = 448

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 21/62 (33%), Positives = 33/62 (53%)
 Frame = +2

Query: 317 IFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQTD 496
           I +V A RTPF   G VF++  A +LQ  A    +++  +   Q+D ++ G VI   +T 
Sbjct: 26  IVLVDAVRTPFVVSGTVFKDLMAVDLQKEAIKALVEKTKLPYEQLDHIICGTVIQECKTS 85

Query: 497 GI 502
            I
Sbjct: 86  NI 87


>Z79694-8|CAB01965.1|  872|Caenorhabditis elegans Hypothetical
           protein F07A5.7 protein.
          Length = 872

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 645 LRSLVRRVKMSLSAVHDRLETRAA*SVDAEHRLLLRNT 532
           L+S + +V++ L +V   L+  +    DAEH+L L NT
Sbjct: 256 LQSQLHQVQLELDSVRTALDEESIARSDAEHKLNLANT 293


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 403  YRLQFGRG-CVAEDSAEGTKRRPFSAHDENPHYCDSKS 293
            Y  Q G G C+   +   +K     A DENP+YC+++S
Sbjct: 2796 YNFQCGDGSCILLGATCDSKPDCADASDENPNYCNTRS 2833


>Z72506-9|CAA96622.1|  872|Caenorhabditis elegans Hypothetical
           protein F07A5.7 protein.
          Length = 872

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 645 LRSLVRRVKMSLSAVHDRLETRAA*SVDAEHRLLLRNT 532
           L+S + +V++ L +V   L+  +    DAEH+L L NT
Sbjct: 256 LQSQLHQVQLELDSVRTALDEESIARSDAEHKLNLANT 293


>X08068-1|CAA30857.1|  882|Caenorhabditis elegans paramyosin
           protein.
          Length = 882

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 645 LRSLVRRVKMSLSAVHDRLETRAA*SVDAEHRLLLRNT 532
           L+S + +V++ L +V   L+  +    DAEH+L L NT
Sbjct: 272 LQSQLHQVQLELDSVRTALDEESIARSDAEHKLNLANT 309


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 403  YRLQFGRG-CVAEDSAEGTKRRPFSAHDENPHYCDSKS 293
            Y  Q G G C+   +   +K     A DENP+YC+++S
Sbjct: 2796 YNFQCGDGSCILLGATCDSKPDCADASDENPNYCNTRS 2833


>AC024877-5|AAF60899.1|  197|Caenorhabditis elegans Hypothetical
           protein Y95B8A.6a protein.
          Length = 197

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 597 DRLETRAA*SVDAEHRLLLRNTSFERRVTCV*IPSVCDEE 478
           +R   RA    D + RLL+RNT   R +  + +   CD+E
Sbjct: 65  ERRRKRAIEWKDTDDRLLMRNTGTSRHILGMTVAVECDDE 104


>U61953-3|AAC48071.3|  491|Caenorhabditis elegans Hypothetical
           protein R08C7.5 protein.
          Length = 491

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -1

Query: 432 PASFKAPTVAIVCSSVADVLRKTPPKVPNGVLLAPTMKIPIIATV 298
           P+  + PT       V  +    PPK+P  V   P  K P++ +V
Sbjct: 310 PSKEEKPTAKTAAPPVKLLTSSPPPKIPKTVAQPPKEKKPVMESV 354


>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
           protein H02F09.3 protein.
          Length = 1275

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = -1

Query: 498 PSVCDEEMTWPTTMLST*AGDTPASFK-APTVAIVCSSVADVLRKTPPKVPNGVLLAPTM 322
           P V    M   T  +++ A +T  +   +PT  +   S A     T   VP   +  PT 
Sbjct: 229 PPVTTSTMATTTANVTSAAPNTTVTISTSPTTVVTVPSTAQTSSTTTVTVPTTTVTGPTT 288

Query: 321 KIPIIATVSQTFYSDLATS 265
            + +  TV  T  S + TS
Sbjct: 289 VVTVPTTV-VTIPSTVVTS 306


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,849,098
Number of Sequences: 27780
Number of extensions: 246997
Number of successful extensions: 757
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)