Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060200.seq
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    24   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.9  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   5.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.8  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
 Frame = +1

Query: 418 LEGGRSVPGSGRQH--GRGPSHLFITN*R--NLHARXAALK-AGIPQEKP 552
           L  G S PG+GR+H   + P    I+     N + R A L+  G  Q KP
Sbjct: 389 LVSGSSTPGTGREHDPAKFPPSFRISRVAAYNTYGRNAGLRYRGPKQNKP 438


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 405  AIVCSSVADVLRKTPPKVPNGVLLAPTM 322
            A+V SS + ++   PP  PNGV+   T+
Sbjct: 1188 ALVMSSESILVSWRPPSQPNGVITQYTV 1215


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 470 GPRPCCRPEPGTLRPPSRHQ 411
           G RP     PG ++PP++HQ
Sbjct: 108 GKRPA---SPGYVQPPTKHQ 124


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = -1

Query: 117 FHETEDNHNTCL--KQTFYFK 61
           F+E+E+  N+CL   +T+Y K
Sbjct: 369 FNESENRRNSCLGSTETYYSK 389


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 328 HDENPHYCDSKSNLLFRSRDQSLFRVFLLV 239
           H + PH   +  N+L   RD     VF L+
Sbjct: 302 HWQLPHNSTNPPNILLYYRDSLALSVFALI 331


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 610 ERCSRSIGNQSRIVC*CRAPASLEEYQL 527
           E+  R +  ++ + C CR   S+EEY +
Sbjct: 99  EKKFRKVITKAPLECMCRPCTSVEEYAI 126


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -1

Query: 348 NGVLLAPTMKIPIIATVSQTFYSDLATSHFFEFSCWS 238
           NG+++   +    + T S  F  +LA S+F    C S
Sbjct: 70  NGMVVYIFLSTKSLRTPSNLFVINLAISNFLMMFCMS 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,618
Number of Sequences: 438
Number of extensions: 3027
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)