Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060199.seq
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.3  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    25   6.9  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    25   6.9  
SPCC1183.09c |pmp31|mug75|plasma membrane proteolipid Pmp31|Schi...    25   9.1  

>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = +3

Query: 420 SSRKRAAPPEPGLPSKLPRHNGAP 491
           SSRKR  PP P LPS L     AP
Sbjct: 18  SSRKRQTPPMPELPSFLLAFPHAP 41


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 277 RGTSCPPVRGKDSRSRSRRNVS 342
           R T CP ++ K SR +++RN S
Sbjct: 46  RITDCPEIKNKKSRRKNQRNSS 67


>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 181 LLWICLGLCVCVSLFSFCLFCVSGQ 107
           L+ +  G C  +S+FS   +C+SGQ
Sbjct: 48  LITLMNGFCGVMSIFSSLRYCLSGQ 72


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -3

Query: 148 VSLFSFCLFCVSGQ 107
           V ++S C+FC+SGQ
Sbjct: 67  VPMYSICVFCLSGQ 80


>SPCC1183.09c |pmp31|mug75|plasma membrane proteolipid
           Pmp31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 105

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 220 FSLFLCPFCVSFSLLWICLGLCVCVSLFSFCLFCVSGQPDL 98
           F L +  F V F ++ I  G C    L + CL C  G P +
Sbjct: 9   FLLIVLSFFVPFIVVGIRRGFCTADFLINICL-CALGIPGI 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,812,807
Number of Sequences: 5004
Number of extensions: 28347
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)