Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060199.seq
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0839 - 28565732-28565908,28566380-28566544,28566656-285667...    31   0.58 
10_01_0289 + 2995946-2996099,2996248-2996783                           29   3.1  
07_03_1157 - 24419157-24419948                                         29   3.1  
02_02_0328 - 9004670-9004753,9004873-9004947,9005031-9005132,900...    28   7.1  
10_06_0136 - 11114409-11114576,11114656-11114784,11114873-111150...    27   9.4  
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171...    27   9.4  
01_05_0054 - 17619757-17619802,17620296-17620440,17620686-176207...    27   9.4  

>04_04_0839 -
           28565732-28565908,28566380-28566544,28566656-28566788,
           28566888-28567007,28568361-28568740
          Length = 324

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -3

Query: 271 VIRKVPPEFRQEADYLSFSLFLCPFCVSFSLLWICLGLCVCVSLFSFCLFCVSGQ 107
           VIR  P  +     +L+F +F   FCV+ + + I + +C C+      L+ VS Q
Sbjct: 158 VIRDAPQLYWLCIVFLAFDVFFVVFCVALACI-IGIAVCCCLPCIIAILYAVSDQ 211


>10_01_0289 + 2995946-2996099,2996248-2996783
          Length = 229

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 399 ISKEVLESSRKRAAPPEPGLPSKLPRHNGAPHHKVVD 509
           I K++++   K+  PP+P    + P+    P H ++D
Sbjct: 144 IKKKIIDHFHKKPVPPKPDPKPEPPKPKPEPEHPILD 180


>07_03_1157 - 24419157-24419948
          Length = 263

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 429 KRAAPPEPGLPSKLPRHNGAPHHKVVDQ 512
           K   PP P +  +LP+H   PH  VV +
Sbjct: 104 KHEEPPHPAVVPELPKHEEPPHPAVVPE 131


>02_02_0328 -
           9004670-9004753,9004873-9004947,9005031-9005132,
           9005681-9005761,9006233-9006535
          Length = 214

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +1

Query: 403 PRRCWKVPAS-EPPRPSP 453
           PRRCW++ AS E P P+P
Sbjct: 38  PRRCWRLLASAEEPAPAP 55


>10_06_0136 -
           11114409-11114576,11114656-11114784,11114873-11115016,
           11115130-11115299,11116441-11116528,11116590-11116652,
           11116678-11116799,11118506-11118671
          Length = 349

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 429 KRAAPPEPGLP-SKLPRHNGAPH 494
           K A PP P LP S  PRH+  PH
Sbjct: 17  KLAPPPPPPLPVSPSPRHHRRPH 39


>05_03_0682 -
           16916437-16916686,16916761-16916822,16917082-16917147,
           16917606-16917737,16917925-16918026,16918146-16918343,
           16918409-16918555,16918804-16918914,16919661-16920194,
           16920269-16920425,16920511-16920660,16920744-16920883,
           16921668-16921784,16922759-16922932,16923020-16923187,
           16923323-16923464,16923610-16923728,16924997-16925098,
           16925618-16925701,16926843-16927142
          Length = 1084

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 423 SRKRAAPPEPGLPSKLPRHNGA-PHHKVVDQ 512
           +++  AP E G+P  +P H+   PH+K + Q
Sbjct: 550 AKRNKAPNEQGIPLLMPHHHMVIPHYKGIGQ 580


>01_05_0054 -
           17619757-17619802,17620296-17620440,17620686-17620743,
           17620822-17620932,17621020-17621129,17622529-17622736
          Length = 225

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -3

Query: 268 IRKVPPEFRQEA-DYLSFSLFLCPFCVSFSLLWICLGLCV 152
           I  V P++ +EA D+LS ++ L P  V     W+CLG C+
Sbjct: 88  ILDVFPDYHKEAEDHLSKAVKLNPSLVD---AWLCLGNCI 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,009,609
Number of Sequences: 37544
Number of extensions: 255262
Number of successful extensions: 914
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)