Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060199.seq
(633 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D21205-1|BAA04747.1| 630|Homo sapiens estrogen responsive finge... 33 1.1
BC042541-1|AAH42541.1| 630|Homo sapiens tripartite motif-contai... 33 1.1
BC016924-1|AAH16924.1| 630|Homo sapiens tripartite motif-contai... 33 1.1
AB208994-1|BAD92231.1| 644|Homo sapiens tripartite motif-contai... 33 1.1
AK128797-1|BAC87611.1| 201|Homo sapiens protein ( Homo sapiens ... 31 3.4
AB065580-1|BAC05810.1| 346|Homo sapiens seven transmembrane hel... 31 3.4
AK075040-1|BAC11368.1| 214|Homo sapiens protein ( Homo sapiens ... 31 4.5
>D21205-1|BAA04747.1| 630|Homo sapiens estrogen responsive finger
protein protein.
Length = 630
Score = 32.7 bits (71), Expect = 1.1
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +3
Query: 399 ISKEVLESSRKRAAPPEPGLPSKLPRHNGAPHHKVVDQRWGTGTLASDVTTQP-AIALR- 572
+ K E + + PP P LPSKLP GAP V ++ G A ++ P + +L+
Sbjct: 380 VKKVSKEEKKSKKPPPVPALPSKLPTF-GAPEQLVDLKQAGLEAAAKATSSHPNSTSLKA 438
Query: 573 --VSTFLGQQLTDL 608
+ TFL + +L
Sbjct: 439 KVLETFLAKSRPEL 452
>BC042541-1|AAH42541.1| 630|Homo sapiens tripartite
motif-containing 25 protein.
Length = 630
Score = 32.7 bits (71), Expect = 1.1
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +3
Query: 399 ISKEVLESSRKRAAPPEPGLPSKLPRHNGAPHHKVVDQRWGTGTLASDVTTQP-AIALR- 572
+ K E + + PP P LPSKLP GAP V ++ G A ++ P + +L+
Sbjct: 380 VKKVSKEEKKSKKPPPVPALPSKLPTF-GAPEQLVDLKQAGLEAAAKATSSHPNSTSLKA 438
Query: 573 --VSTFLGQQLTDL 608
+ TFL + +L
Sbjct: 439 KVLETFLAKSRPEL 452
>BC016924-1|AAH16924.1| 630|Homo sapiens tripartite
motif-containing 25 protein.
Length = 630
Score = 32.7 bits (71), Expect = 1.1
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +3
Query: 399 ISKEVLESSRKRAAPPEPGLPSKLPRHNGAPHHKVVDQRWGTGTLASDVTTQP-AIALR- 572
+ K E + + PP P LPSKLP GAP V ++ G A ++ P + +L+
Sbjct: 380 VKKVSKEEKKSKKPPPVPALPSKLPTF-GAPEQLVDLKQAGLEAAAKATSSHPNSTSLKA 438
Query: 573 --VSTFLGQQLTDL 608
+ TFL + +L
Sbjct: 439 KVLETFLAKSRPEL 452
>AB208994-1|BAD92231.1| 644|Homo sapiens tripartite
motif-containing 25 variant protein.
Length = 644
Score = 32.7 bits (71), Expect = 1.1
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +3
Query: 399 ISKEVLESSRKRAAPPEPGLPSKLPRHNGAPHHKVVDQRWGTGTLASDVTTQP-AIALR- 572
+ K E + + PP P LPSKLP GAP V ++ G A ++ P + +L+
Sbjct: 394 VKKVSKEEKKSKKPPPVPALPSKLPTF-GAPEQLVDLKQAGLEAAAKATSSHPNSTSLKA 452
Query: 573 --VSTFLGQQLTDL 608
+ TFL + +L
Sbjct: 453 KVLETFLAKSRPEL 466
>AK128797-1|BAC87611.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ45585 fis, clone BRTHA3013882. ).
Length = 201
Score = 31.1 bits (67), Expect = 3.4
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -3
Query: 214 LFLCPFCVSFSLLWICLGLCVCVSLFSFCLFCV 116
L LC VS L +C+ +C+CV L S CL CV
Sbjct: 41 LCLCVLSVSVCLC-VCVSVCLCVCLVSVCL-CV 71
Score = 31.1 bits (67), Expect = 3.4
Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 208 LCPFCVSFSL-LWICLGLCVCVSLFSFCLFCVS 113
LC CV L + +CL LCVCV L FCVS
Sbjct: 97 LC-LCVCVCLCVCVCLHLCVCVGLCVSVCFCVS 128
Score = 31.1 bits (67), Expect = 3.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 214 LFLCPFCVSFSLLWICLGLCVCVSLFSFCLFCV 116
L +C F +W+C+ LCVCV L CV
Sbjct: 133 LCVCVCICVFVCVWVCVCLCVCVCLCVCLCLCV 165
>AB065580-1|BAC05810.1| 346|Homo sapiens seven transmembrane helix
receptor protein.
Length = 346
Score = 31.1 bits (67), Expect = 3.4
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 8/43 (18%)
Frame = -3
Query: 229 YLSFSLFLCPF-----CVSFSL---LWICLGLCVCVSLFSFCL 125
YL S++LC + CVS SL + CL LCVC+ + S CL
Sbjct: 110 YLHISVYLCVYVCICVCVSVSLCVSVCACLSLCVCIRV-SVCL 151
>AK075040-1|BAC11368.1| 214|Homo sapiens protein ( Homo sapiens
cDNA FLJ90559 fis, clone OVARC1001049, weakly similar to
TRANSCRIPTION FACTOR HES-1 (C-HAIRY1). ).
Length = 214
Score = 30.7 bits (66), Expect = 4.5
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Frame = +3
Query: 420 SSRKRAAPPEPGLPSKL-----PRHNGAPHHKVVDQRWGTGTL 533
S R+R PPE G P +L PR G H V R G G+L
Sbjct: 113 SCRRRGLPPEQGAPPRLLGEPRPRGPGGLGHAVAAHRAGRGSL 155
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,469,482
Number of Sequences: 237096
Number of extensions: 1299167
Number of successful extensions: 6163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6126
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -