Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060199.seq
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81585-2|CAB04682.2|  303|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z81585-2|CAB04682.2|  303|Caenorhabditis elegans Hypothetical
           protein T05E12.2 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 21/65 (32%), Positives = 32/65 (49%)
 Frame = -3

Query: 286 LSLGIVIRKVPPEFRQEADYLSFSLFLCPFCVSFSLLWICLGLCVCVSLFSFCLFCVSGQ 107
           +SL I + +V   +     Y    +F  P  + F +L IC+GL   V LF FC F +  +
Sbjct: 104 ISLAIAVERVVAAYIPIYFYKYRPIF--PTFIIF-ILSICIGLNEDVFLFVFCEFSLQIR 160

Query: 106 PDLEA 92
           P+  A
Sbjct: 161 PNCAA 165


>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical
           protein F36H1.2b protein.
          Length = 1379

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 441 PPEPGLPSKLPRHNGAPH 494
           PP PG+   L RH G PH
Sbjct: 634 PPYPGIHGSLRRHCGVPH 651


>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical
           protein F36H1.2a protein.
          Length = 1398

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 441 PPEPGLPSKLPRHNGAPH 494
           PP PG+   L RH G PH
Sbjct: 634 PPYPGIHGSLRRHCGVPH 651


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,719,293
Number of Sequences: 27780
Number of extensions: 181919
Number of successful extensions: 670
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)