Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060199.seq
         (633 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68070.1 68414.m07776 zinc finger (C3HC4-type RING finger) fa...    32   0.36 
At2g15520.1 68415.m01776 zinc finger protein, putative strong si...    30   1.1  
At2g19080.1 68415.m02228 metaxin-related contains 1 transmembran...    30   1.5  
At3g30200.1 68416.m03810 fructose-6-phosphate 2-kinase-related /...    29   1.9  
At1g40087.1 68414.m04742 hypothetical protein                          28   5.9  
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro...    27   7.8  

>At1g68070.1 68414.m07776 zinc finger (C3HC4-type RING finger)
           family protein very low similarity to RING-H2 finger
           protein RHG1a [Arabidopsis thaliana] GI:3822225;
           contains Pfam profile: PF00097 zinc finger, C3HC4 type
           (RING finger)
          Length = 343

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 229 YLSFSLFLCPFCVSFSLLWICLGLCVCVSLFSFCLFCVSGQ 107
           +L+F +F   FCV  + L I + LC C+      L+ V+GQ
Sbjct: 198 FLAFDVFFAIFCVVLACL-IGIALCCCLPCIIALLYAVAGQ 237


>At2g15520.1 68415.m01776 zinc finger protein, putative strong
           similarity to zinc finger protein [Arabidopsis thaliana]
           GI:976277
          Length = 483

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +3

Query: 417 ESSRKRAAPPEPGLPSKLPRHNGAPHHKVVDQRWGTGTLASDVTTQPAIALRVST 581
           + +++R  PP+     K PR    PH+ V DQ+ G G+ +S    + A+ L  ST
Sbjct: 413 KKAKQRNRPPKHARKPK-PRD---PHYNVADQKIGKGSASSSKDKRKAVDLGTST 463


>At2g19080.1 68415.m02228 metaxin-related contains 1 transmembrane
           domain; similar to Metaxin 1 (component of a preprotein
           import complex) (Swiss-Prot:P47802) [Mus musculus];
          Length = 315

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 396 KISKEVLESSRKRAAPPEPGLPSKLPRHNGAPHHK 500
           K+  E LE+S    +PP    PS  PR +  P  K
Sbjct: 232 KLKSEFLEASSSSPSPPLHSFPSSFPRKSSKPKSK 266


>At3g30200.1 68416.m03810 fructose-6-phosphate 2-kinase-related /
           fructose-2,6-bisphosphatase-related similar to
           fructose-6-phosphate
           2-kinase/fructose-2,6-bisphosphatase [Arabidopsis
           thaliana] GI:13096098
          Length = 409

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 459 PSKLPRHNGAPHHKVVDQRWGTGTLASDVTTQPAIALRVSTFLGQQLTDLT 611
           PS+L RH+ A   K ++       L + V T       +STFLGQ L + T
Sbjct: 319 PSRLVRHSNATRRKDIENSELVAQLKTQVKTLGDQVNAMSTFLGQILGNST 369


>At1g40087.1 68414.m04742 hypothetical protein
          Length = 359

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 459 PSKLPRHNGAPHHKVVDQRWGTGTLASDVTTQPAIALRVSTFLGQQLTDLT 611
           PS+L RH+ A   + ++       L + V T       +STFLGQ L + T
Sbjct: 269 PSRLVRHSNATRRQDIENSELVAQLKTQVKTLGDQVNAMSTFLGQILGNST 319


>At5g58160.1 68418.m07280 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|Q05858 Formin (Limb deformity protein) {Gallus
           gallus}; contains Pfam profile PF02181: Formin Homology
           2(FH2) Domain
          Length = 1307

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 423 SRKRAAPPEPGLPSKLPRHNGAP 491
           S  +++PP P  P +LP H+ +P
Sbjct: 748 SAMKSSPPAPPAPPRLPTHSASP 770


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,323,121
Number of Sequences: 28952
Number of extensions: 175266
Number of successful extensions: 507
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)