Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060197.seq
         (511 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.1  
AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.      21   6.4  
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      21   6.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   6.4  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   8.4  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -2

Query: 447 FLGSYVGGAAQSVSEPTTADTCGWWATV 364
           F+ S  GG   S+ +  T   CG W  +
Sbjct: 208 FVLSRAGGLVNSLYQNATRKVCGVWKRI 235


>AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.
          Length = 515

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 208 KYWTDIFSHAP 240
           K+WTDI++  P
Sbjct: 501 KFWTDIYNSNP 511


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 208 KYWTDIFSHAP 240
           K+WTDI++  P
Sbjct: 503 KFWTDIYNSNP 513


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
          protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 61 PKPVSGSGXHGL 96
          P PV G G HGL
Sbjct: 38 PYPVPGLGLHGL 49


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 24  VANESLRGGDLATQARVWQWXSWS 95
           V  E L   D +  A +W W S S
Sbjct: 393 VFEELLLDADWSVNAGMWMWLSCS 416


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,203
Number of Sequences: 336
Number of extensions: 2423
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12154132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)