Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060197.seq
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    32   0.043
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    32   0.043
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    31   0.076
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    27   2.2  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    26   2.9  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   6.6  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   8.7  

>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 32.3 bits (70), Expect = 0.043
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = +2

Query: 227 SHTHLPCYRGITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGS 406
           S T +    GI++AD+ V++ + H++   L       L NV RWF  + HQ  V     S
Sbjct: 134 SSTFIAQDSGISVADLAVYARI-HSYICGLSAKEGYKLNNVCRWFDFIQHQESVMEAANS 192

Query: 407 LTL 415
           +++
Sbjct: 193 MSM 195


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 32.3 bits (70), Expect = 0.043
 Identities = 22/83 (26%), Positives = 39/83 (46%)
 Frame = +2

Query: 224 SSHTHLPCYRGITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVG 403
           +S T+L   R +TLAD+     L     +VL  S  +   ++ R++ T+ HQ ++ A+  
Sbjct: 145 ASKTYLVGSR-LTLADIFFTCFLKFGATYVLTKSYLAKYTHIYRYYQTIYHQAKLDAITE 203

Query: 404 SLTLCAAPPTYXPKKYQELAGAQ 472
            L     P      + +E A A+
Sbjct: 204 PLKFIDQPLPIIKAENKEAAPAK 226


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 31.5 bits (68), Expect = 0.076
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 260 TLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQV 388
           TLAD+   S L   F  ++D   R  L ++ R+++T+ HQ ++
Sbjct: 161 TLADLFFGSLLRIFFNSIIDEKTRKELPHLTRYYITMFHQAKL 203


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 52  IWLPKPVSGSGXHGLTANYCL-LPALGSSLTLV 147
           +W+P PV  SG    T   C+ LP  G  +T V
Sbjct: 23  LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 190 TYWPP*KYWTDIFSHAPSL 246
           TY PP  Y  D+FS APS+
Sbjct: 257 TYLPPFNYDHDVFSFAPSV 275


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
            Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 99   SELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTEES 260
            ++L P  CA +   L   + ++   +R K +L   LK+L   +  R   V++ES
Sbjct: 972  NDLTPEQCAALLSCLVFQEKSEVENQRMKEELAGPLKILQ-EMARRIAKVSKES 1024


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 106 YCLLPALGSSLTLVSCNSTNRML 174
           + L+P LG  L + SCN+  R L
Sbjct: 261 HALVPELGLQLAMASCNALLRYL 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,024,726
Number of Sequences: 5004
Number of extensions: 39584
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)