Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060197.seq
         (511 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                 60   1e-09
SB_22045| Best HMM Match : Amelogenin (HMM E-Value=0.23)               32   0.32 
SB_53139| Best HMM Match : EGF (HMM E-Value=3.2e-08)                   31   0.73 
SB_47549| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)             27   6.8  
SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)               27   9.0  
SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)                  27   9.0  

>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 29/75 (38%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
 Frame = +3

Query: 81  WXSWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTEES 260
           + +++D ELLPA+  WVFP  G+MQ++KQ+ ++A  D+   + +L+  LL +TFLV E  
Sbjct: 75  YVNFADQELLPAAATWVFPTYGMMQYHKQSTDKAMEDVKKYMTMLNDVLLMKTFLVGER- 133

Query: 261 HLPMSLSSVH-CCML 302
              ++L+ +  CC+L
Sbjct: 134 ---VTLADIAVCCVL 145


>SB_22045| Best HMM Match : Amelogenin (HMM E-Value=0.23)
          Length = 149

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 103 NYCLLPALGSSLTLVSCNSTNRMLNVQSLTYWPP*KYWTDIFSHAPSLLPRNHTCR 270
           N+   PA  ++ + V  N  +R +  ++ +  PP   +T I S   S +P NH CR
Sbjct: 26  NHAYSPATSTAQSPVPSNHQHRPITSEAQSPAPPNHQYTPITSAPQSPVPPNHQCR 81


>SB_53139| Best HMM Match : EGF (HMM E-Value=3.2e-08)
          Length = 221

 Score = 30.7 bits (66), Expect = 0.73
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 100 ANYCLLPALGSSLTLVSCNSTNRMLNVQSLTYWPP*KYWTDIFSHAPSLLP--RNHTCRC 273
           ++ C+  +  S+  L+ CNS   +L   SL   P    W+   +++ + +    N+TCRC
Sbjct: 75  SSLCVNASSTSATQLLCCNSLPFLLKKASLRQSPIDFRWSRSNAYSGTCIDGINNYTCRC 134

Query: 274 HCLQYTAAC 300
           H     A C
Sbjct: 135 HVGYKGALC 143


>SB_47549| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 148 SCNSTNRMLNVQSLTYWPP*KYWTDIFSHAPSLLPRNHTCRCHCLQYT 291
           + N T+   N   L+ +P  KY+ D F++A   L R      HC+  T
Sbjct: 209 TANITDLPRNSSKLSCFPEQKYYLDEFAYARRYLSRLSIIEIHCIWQT 256


>SB_11257| Best HMM Match : GCC2_GCC3 (HMM E-Value=2.7e-11)
          Length = 3810

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +2

Query: 128  GLPLPWYHAIQQTEC*TCKV*PTGRLKSTGRTSSHTHLPCYRG 256
            GL +P+  A  + EC TC   P G +   G   S    PCYRG
Sbjct: 3289 GLVIPYEGARSEAECQTC---PAGFICKAG---SSIPEPCYRG 3325


>SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)
          Length = 554

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 147 IMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLV 248
           +M + K +VE  K DL   L+ +   LLTR FL+
Sbjct: 194 VMSWIKHDVESRKKDLANLLEHIRFPLLTRKFLI 227


>SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 51  DLATQARVWQWXSWSDSELLPASCA 125
           DL T A+V+ W  W   ++   SCA
Sbjct: 78  DLTTTAQVYSWAMWEPWQMRNLSCA 102


>SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)
          Length = 141

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 51  DLATQARVWQWXSWSDSELLPASCA 125
           DL T A+V+ W  W   ++   SCA
Sbjct: 78  DLTTTAQVYSWAMWEPWQMRNLSCA 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,319,890
Number of Sequences: 59808
Number of extensions: 340585
Number of successful extensions: 943
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)