Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060197.seq
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72507-7|CAD56569.1|  373|Caenorhabditis elegans Hypothetical pr...    66   1e-11
Z72507-6|CAA96631.1|  398|Caenorhabditis elegans Hypothetical pr...    66   1e-11
Z72507-15|CAJ55245.1|  365|Caenorhabditis elegans Hypothetical p...    52   2e-07
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    33   0.16 
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    33   0.16 
U53333-12|AAA96165.1|  387|Caenorhabditis elegans Nuclear hormon...    29   2.6  
AC024832-3|AAF59615.1|  121|Caenorhabditis elegans Hypothetical ...    28   4.5  
U39855-1|AAA81080.3|  615|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>Z72507-7|CAD56569.1|  373|Caenorhabditis elegans Hypothetical
           protein F17C11.9b protein.
          Length = 373

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 31/69 (44%), Positives = 46/69 (66%)
 Frame = +2

Query: 257 ITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTY 436
           ++LADV V   LL AFQ+VLD + R S++NV RWF TV +QP V  V+G ++L ++   +
Sbjct: 110 LSLADVSVALDLLPAFQYVLDANARKSIVNVTRWFRTVVNQPAVKEVLGEVSLASSVAQF 169

Query: 437 XPKKYQELA 463
              K+ EL+
Sbjct: 170 NQAKFTELS 178



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 25/70 (35%), Positives = 40/70 (57%)
 Frame = +3

Query: 57  ATQARVWQWXSWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTR 236
           +  A   QW  +++  LLPA   +V P +    F+K+ VE+ K++L   L+VLD  L+ +
Sbjct: 43  SANAETVQWLQFAEGYLLPAVLGYVLPSVSAANFDKKTVEQYKNELNGQLQVLDRVLVKK 102

Query: 237 TFLVTEESHL 266
           T+LV E   L
Sbjct: 103 TYLVGERLSL 112


>Z72507-6|CAA96631.1|  398|Caenorhabditis elegans Hypothetical
           protein F17C11.9a protein.
          Length = 398

 Score = 66.1 bits (154), Expect = 1e-11
 Identities = 31/69 (44%), Positives = 46/69 (66%)
 Frame = +2

Query: 257 ITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTY 436
           ++LADV V   LL AFQ+VLD + R S++NV RWF TV +QP V  V+G ++L ++   +
Sbjct: 135 LSLADVSVALDLLPAFQYVLDANARKSIVNVTRWFRTVVNQPAVKEVLGEVSLASSVAQF 194

Query: 437 XPKKYQELA 463
              K+ EL+
Sbjct: 195 NQAKFTELS 203



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 25/70 (35%), Positives = 40/70 (57%)
 Frame = +3

Query: 57  ATQARVWQWXSWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTR 236
           +  A   QW  +++  LLPA   +V P +    F+K+ VE+ K++L   L+VLD  L+ +
Sbjct: 68  SANAETVQWLQFAEGYLLPAVLGYVLPSVSAANFDKKTVEQYKNELNGQLQVLDRVLVKK 127

Query: 237 TFLVTEESHL 266
           T+LV E   L
Sbjct: 128 TYLVGERLSL 137


>Z72507-15|CAJ55245.1|  365|Caenorhabditis elegans Hypothetical
           protein F17C11.9c protein.
          Length = 365

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 22/53 (41%), Positives = 35/53 (66%)
 Frame = +2

Query: 305 QHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYXPKKYQELA 463
           Q+VLD + R S++NV RWF TV +QP V  V+G ++L ++   +   K+ EL+
Sbjct: 118 QYVLDANARKSIVNVTRWFRTVVNQPAVKEVLGEVSLASSVAQFNQAKFTELS 170



 Score = 37.5 bits (83), Expect = 0.006
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 57  ATQARVWQWXSWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALK-VLDGH 224
           +  A   QW  +++  LLPA   +V P +    F+K+ VE+ K++L   L+ VLD +
Sbjct: 68  SANAETVQWLQFAEGYLLPAVLGYVLPSVSAANFDKKTVEQYKNELNGQLQYVLDAN 124


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical
           protein F25C8.3b protein.
          Length = 3175

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 308 HVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYXPKKYQEL 460
           H L PS+ ++L +V RW L  A  P V    GSL L        P   Q++
Sbjct: 85  HGLSPSLSNALASVSRWKLVRAALPHVIQCCGSLLLANVGEKKLPTSLQKI 135


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical
           protein F25C8.3a protein.
          Length = 3184

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +2

Query: 308 HVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYXPKKYQEL 460
           H L PS+ ++L +V RW L  A  P V    GSL L        P   Q++
Sbjct: 85  HGLSPSLSNALASVSRWKLVRAALPHVIQCCGSLLLANVGEKKLPTSLQKI 135


>U53333-12|AAA96165.1|  387|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 78 protein.
          Length = 387

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +3

Query: 87  SWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAAL 206
           S+ ++ +L A C W   +  + + +K+NV + KS L+  L
Sbjct: 298 SFEENAILKALCCWQTAHFKLEECDKENVRKQKSLLVQCL 337


>AC024832-3|AAF59615.1|  121|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.2 protein.
          Length = 121

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 129 VFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTEE 257
           VF  L ++ F  +N E+ KS++LAA     G     TF+ T +
Sbjct: 35  VFALLAVVAFANRNPEQMKSEMLAAGVSAAGVATISTFMETHK 77


>U39855-1|AAA81080.3|  615|Caenorhabditis elegans Hypothetical
           protein F18G5.4 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 83  PLPDTGLGSQISSAETFIGNVVSDGIL 3
           P+  + +    +S  TF+G VVSDGI+
Sbjct: 514 PMNGSTIREDFASESTFLGRVVSDGIM 540


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,660,756
Number of Sequences: 27780
Number of extensions: 241713
Number of successful extensions: 636
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)