Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060197.seq
         (511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    25   0.60 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   7.4  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   7.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   7.4  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 24.6 bits (51), Expect = 0.60
 Identities = 23/72 (31%), Positives = 31/72 (43%)
 Frame = -1

Query: 277 NDIGKCDSSVTRKVRVRRCPSSTFKAASRSDFARSTFCLLNCMIPR*GKTQAQEAGSSSL 98
           ND G    S  RK  + RC S    AAS  D + +T       +     T+   + S+ L
Sbjct: 197 NDEGIETDSDRRKGSIARCWSLDSTAASDEDISLTTHQQKRHKL---RVTRCYSSDSAVL 253

Query: 97  SDHDXHCQTRAW 62
           SD D   QT+ W
Sbjct: 254 SDED---QTKGW 262


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 506 HTSYLFCPPSCXVHQLTP 453
           HT+  FC P C  + + P
Sbjct: 39  HTTNAFCLPFCGPNVINP 56


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -3

Query: 506 HTSYLFCPPSCXVHQLTP 453
           HT+  FC P C  + + P
Sbjct: 38  HTTNAFCLPFCGPNVINP 55


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 24  VANESLRGGDLATQARVWQWXSWS 95
           V +E L   D +  A +W W S S
Sbjct: 397 VFDELLLDADWSVNAGMWMWLSCS 420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,781
Number of Sequences: 438
Number of extensions: 2813
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)