Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060196.seq
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.03c |rmi1||RecQ mediated genome instability protein Rmi... 34 0.021
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 30 0.34
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 28 1.0
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 27 2.4
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 27 3.1
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 4.1
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 26 4.1
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe... 25 7.2
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1... 25 7.2
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 25 7.2
>SPAC26A3.03c |rmi1||RecQ mediated genome instability protein
Rmi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 33.9 bits (74), Expect = 0.021
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 297 APKANEESTSAPRMLKLTLHDGK-VTCTGLEISHIPSLSINTPPGTKLLLKNEELEVCHG 473
A A ++ + +M +L L D GLE I + ++T GTKLL+KN + V G
Sbjct: 137 AQDAVQKGSELKKMCRLILEDSNGQRFWGLERKPIKGIQLSTKLGTKLLVKN--VLVRRG 194
Query: 474 VVWLTPSVISVL 509
V+ L P+ ++L
Sbjct: 195 VLMLDPNNTTIL 206
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 29.9 bits (64), Expect = 0.34
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 256 APLLFKFRRLGMCQLLKLMKNQHL 327
AP+ F+F + G C+L KNQH+
Sbjct: 288 APICFEFAKYGFCELGTSCKNQHI 311
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 557 DFCSVPIFQSYEILFRQYRYH*WGEPYHSVTNF 459
DF P+FQ+ + LFR Y Y S+TNF
Sbjct: 444 DFLKAPLFQTLQYLFRLYPYQRDFIIEESLTNF 476
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 27.1 bits (57), Expect = 2.4
Identities = 21/77 (27%), Positives = 34/77 (44%)
Frame = +1
Query: 10 LIIFNSFSQNNVNLTLNQNMSLRETLKELGWHLTEEGIDTITENGQIQDVNILSKKALDY 189
L+IFN+ + + + L SL+ET K WH + + +V+ L + L Y
Sbjct: 756 LLIFNASTSSMMKTWLCAKFSLKETNKTSFWHSSYNLFNRQYHVDMPDNVSDLPQTRLCY 815
Query: 190 DLRDISEGSLPEDFVKD 240
+ G L E+ KD
Sbjct: 816 GACVYNVGLLDEEKRKD 832
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Frame = +1
Query: 19 FNSFSQNNVNLT---LNQNMSLRETLKELGWHLTEEGID-TITENGQ-IQDV--NILSKK 177
++ + NN+N+ LN N+ R + E W L ++ +D I E Q ++DV N ++KK
Sbjct: 26 YHKDNPNNINIAKNLLNNNIQARCSTNEASWKLAQKELDLKIREYEQKLKDVKLNDINKK 85
Query: 178 A 180
+
Sbjct: 86 S 86
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 473 SGMAHPISDICIGGTVSHMIEKWELNRSLAKHTRGG 580
S + P +ICI G++ I W+L+ K+ G
Sbjct: 552 SVLYEPERNICISGSMDKSIRVWDLSTGTCKYVLEG 587
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +1
Query: 67 MSLRETLKELGWHLTEEGIDTITENGQI 150
M +RE KE GW L GI + G I
Sbjct: 342 MLMREAAKEYGWKLNNAGIALMWRGGCI 369
>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 195
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = +3
Query: 279 KIRNVSAPKANEESTSAPRMLKLTLHDGKVTCTGLEISHIPSLSINTPPGTKLLLKN 449
KI NV K +AP MLK D V T IP +++ GT + L++
Sbjct: 13 KIANVLDSKGTIIPEAAPVMLKKPAKDESVDSTIQVGDVIPDITLPDEDGTSIRLRD 69
>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 283
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 85 LKELGWHLTEEGIDTITENGQIQDVNILSKKALDYDLRDISEGSLPEDFVKD 240
+KE G+ +T +D + N + N + ++ LRD S LP +FV D
Sbjct: 64 MKEHGFGVTS--LDEVAYNAKFWGRNWNKGECIELVLRDASNRWLPFEFVMD 113
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 565 FGKTSVQFPFFNHMRYCSANTDITD 491
FG F F+N +Y TDIT+
Sbjct: 484 FGIEDFDFGFYNKTKYAGLETDITN 508
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,367
Number of Sequences: 5004
Number of extensions: 49857
Number of successful extensions: 161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -