Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060196.seq
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0747 - 19251617-19251781,19252377-19252502,19252606-192527... 49 3e-06
01_01_0550 + 4058600-4058878,4059485-4059652,4060306-4060552,406... 44 1e-04
04_03_0958 - 21241230-21241327,21241693-21241893,21241989-212421... 29 3.2
03_06_0483 - 34226496-34226864,34227140-34227360,34227677-342279... 29 4.3
12_02_0680 + 21903520-21904093,21904474-21905162 28 5.6
07_03_1084 - 23849582-23849965 28 7.5
07_01_1107 + 10205351-10207519 28 7.5
08_02_0101 + 12374476-12376683 27 9.9
07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520 27 9.9
>04_03_0747 -
19251617-19251781,19252377-19252502,19252606-19252716,
19252931-19253679,19254034-19254167,19254595-19254740,
19255166-19255336,19255977-19256828
Length = 817
Score = 49.2 bits (112), Expect = 3e-06
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Frame = +3
Query: 258 PVVVQIQKIRNVSAP---KANEESTSAPRMLKLTLHDGKVTCTGLEISHIPSLSINTPPG 428
P+V+Q+ +I N+SAP + + R LKL++ DG G+E I L + P G
Sbjct: 280 PLVLQVDEIVNLSAPLRERYRDAHAGPKRCLKLSMTDGIQRIYGMEYRPIKDLEVLAPAG 339
Query: 429 TKLLLKNEELEVCHGVVWLTPSVISVL 509
K++++N + + G+ L P VI +L
Sbjct: 340 FKIVIRN--VHIRRGLFMLVPEVIEIL 364
>01_01_0550 +
4058600-4058878,4059485-4059652,4060306-4060552,
4061355-4061791
Length = 376
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/89 (26%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
Frame = +3
Query: 249 IRSPVVVQIQKIRNV--SAPKANEESTSAPRMLKLTLHDGKVTCTGLEISHIPSLSINTP 422
+ P+V+Q+ +R++ S A+ ++ R+L+ L DG +E IP + +
Sbjct: 86 LHGPIVLQVVSVRDIYRSIIDASFKNPQQHRLLRFVLTDGISEAVAIEFFPIPFIIEDIA 145
Query: 423 PGTKLLLKNEELEVCHGVVWLTPSVISVL 509
PGTK+ L+N ++ + +G++ L+ IS++
Sbjct: 146 PGTKICLEN-KIPIHNGILCLSAKNISIM 173
>04_03_0958 -
21241230-21241327,21241693-21241893,21241989-21242110,
21242462-21242536,21242626-21242714,21242808-21242888,
21243552-21243674
Length = 262
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +1
Query: 55 LNQNMSLRETLKELGWHLTEEGIDTITENGQIQDVNI-LSKKALDYDLRDISEGSLPEDF 231
L+QN S+ W EEG++T+ + + I LSKK LD + +P D
Sbjct: 74 LHQNTSIESIDITDTWEPLEEGLNTLETTRHVSLITITLSKKELDTSSPGY-QPPIPADQ 132
Query: 232 VKDPSKLE 255
V+ P+ +
Sbjct: 133 VRPPTDFD 140
>03_06_0483 -
34226496-34226864,34227140-34227360,34227677-34227933,
34228388-34228483,34228660-34228805,34229774-34229977
Length = 430
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 270 QIQKIRNVSAPKANEESTSAPRMLKLTLHDGK-VTCTGLEISHIPS 404
Q +K RN+S +A E S S PR ++T+ DG V + + +PS
Sbjct: 348 QCEKPRNISVIQAGEGSKSQPR--QITIDDGSPVASMNFDEAELPS 391
>12_02_0680 + 21903520-21904093,21904474-21905162
Length = 420
Score = 28.3 bits (60), Expect = 5.6
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -1
Query: 598 PSFSSYASSCVFGKTSVQFP 539
P+F+SY +C++ S++FP
Sbjct: 260 PTFASYGDTCIYSTPSMEFP 279
>07_03_1084 - 23849582-23849965
Length = 127
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 509 GGTVSHMIEKWELNRSLAKHTRGGIGAEGGS 601
GG+ H+I+ WEL S A+ R G E G+
Sbjct: 75 GGSRRHLIDYWELAGSAAEDARPGSVQETGA 105
>07_01_1107 + 10205351-10207519
Length = 722
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +3
Query: 381 LEISHIPSLSINTPPGTKLLLKNEELEVCHGVVWLTPSVISVL 509
++++H SL+ P G KLLL LE+ H V + PS I VL
Sbjct: 660 IKLNHCSSLT-QLPQGIKLLLNLRCLEIAHSNVQM-PSGIRVL 700
>08_02_0101 + 12374476-12376683
Length = 735
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 594 PSAPMPPLVCLARLLFS 544
PSAP+PPL CL LL +
Sbjct: 34 PSAPLPPLRCLNTLLMA 50
>07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520
Length = 568
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = +3
Query: 324 SAPRMLKLTLHDGKVTCTGLEISH--IPSLSINTPPGT 431
S+P L + HD V G ++ H + +L + PPGT
Sbjct: 283 SSPLKLPTSCHDSLVAMIGAKLDHATLDNLLVPAPPGT 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,361,851
Number of Sequences: 37544
Number of extensions: 330169
Number of successful extensions: 983
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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